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Tidal Analysis Program in PYthon (TAPPY) uses the least squares optimization function from scipy to perform a harmonic analysis (calculate amplitude and phases of a set of sine waves) of a hourly time series of water level values.
SPINNEY provides an implementation of helicity spinors and related algorithms for the symbolical manipulation program FORM. The description of this package is published in http://arxiv.org/abs/1008.0803 .
DIGIgrain is a general 3D data processing, data reduction program for 3D X-ray Diffraction Microscopy (3DXRD) and High-Energy Diffraction Microscopy (HEDM) measurements. It is designed to be used for analysis of both near-field and far-field images.
The Fortran program MOLLY generates atomic positions in a molecule from those of a small number of prototype atoms and the molecule's point symmetry. It is intended as a time-saving aid in preparing input data for computational physics software.
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EXTREMA is an interactive program with publication quality graphics and mathematical analysis capabilities. EXTREMA can be GUI and/or command driven. The command language includes conditional branching, looping and subroutine calling constructs.
A simple little program, that can convert quaternions from a exponential form to a usual form. I will argue for this method, which I find very natural and quite intuitive.
RHydrogen is a lightweight open-source c++ program which solves the Dirac equation for Hydrogen-like atoms. This implementation is based on the ROOT program library.
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This program can be used to simulate the thermodynamics of magnetic materials with "classical" spins. It does this using the Metropolis Monte Carlo method. Arbitrary lattices and a number of magnetic interactions can be modelled.
QMcBeaver is an object-oriented program to perform Quantum Monte Carlo calculations on atoms and molecules. It is designed to be easy to modify, allowing new ideas to be quickly implemented.
BrennerMD is a public domain Fortran molecular dynamics program by Donald Brenner and other people. This project is to maintain the original source code and to build a Python interface on top of it.
A program which simulates the motion of particles due to electric charge and gravitational force. Calculations are done in two dimensions, without care given to real world factors such as air resistance, although such functionality may be added later.
ea-fold is a platform to perform protein folding simulations by means of evolutionary algorithms. The program implements a parallelized distributed evolutionary algorithms and a flexible force field.
This is an extension to the standard 2D HF package (A Numerical Hartree-Fock Program for Diatomic Molecules by Jacek Kobus, Leif Laaksonen and Dage Sundholm) that adds some extra functionality.
CHIMP aims to provide a complete suite of tools for the investigation and modeling of chemical systems. It currently is able to parse chemical reaction mechanisms and run kinetic Monte Carlo simulations on the reacting system.
PhantomPhysics is a physics equation solving program geared towards students in a High School physics class. This program can solve for just about any variable for any equation you might encounter in High School physics. PhantomPysics is written in Java.