Showing 66 open source projects for "sql command line"

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  • 1
    Cell Motility Analysis Package analyzes timelapse sequences of moving cells. Various quantitites characterizing motility are calculated, including normal velocity of the membrane, cell contact area, and spatio-temporal auto-correlation functions.
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  • 2
    MANIKK is a toolkit for generating numerical interaction parameters -- describing the interaction between metallic atoms in a coherent lattice -- and for performing numerical Monte Carlo-simulations of physical properties of alloy systems.
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  • 3
    An object-oriented partial differential equation (PDE) solver, written in Python, based on a standard finite volume approach and includes interface tracking algorithms. *WARNING* The project is no longer using Sourceforge to maintain its repository.
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  • 4
    ea-fold is a platform to perform protein folding simulations by means of evolutionary algorithms. The program implements a parallelized distributed evolutionary algorithms and a flexible force field.
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  • 5
    KHorn is a universal easy to use CAS (Computer Algebra System). It will be usable for Physics, Chemistry, Mathematics and other natural sciences. KHorn is based on the GMP library.
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  • 6
    sispread allows to simulate the dynamics of an hypothetic infectious disease within a contact network of connected people. It is intended to help people concerned by public health to easily perform epidemic simulations and to analyze their results.
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  • 7
    runsbml - Pathway Simulation Tool emulates the dynamics of biological pathways by calculating concentrations of biochemical compounds at different times and conditions.
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  • 8
    Automated peak fitting and spectrum calibration program.
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  • 9
    The X-Ray Data Processing package enables ad hoc wrangling of data from x-ray experiments. A collection of software based on this library is also available.
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  • 10
    CHIMP aims to provide a complete suite of tools for the investigation and modeling of chemical systems. It currently is able to parse chemical reaction mechanisms and run kinetic Monte Carlo simulations on the reacting system.
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  • 11
    The fst2v5d package converts data stored in the Canadian RPN Standard File (FST) format into Vis5D format. FST files, commonly used to store meteorological data, are scanned by fst2v5d to generate both 4D fields and independent topography input files.
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  • 12
    Jhwctl provides a textgraphical user interface to access the LPT hardware port. [In the making: LPT/COM, FileTransfer, PCSP, VGA font, libSIOS/libTMET]
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  • 13
    A radiative transfer code for neutron star hydrogen atmospheres.
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  • 14
    XDiff is a program for numerical calculations of X-ray powder diffraction patterns of nanocrystals dispersed in a liquid phase
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  • 15
    The High Energy Physics Tool calculates decay rates and cross sections of tree-level processes. It makes use of computational code from the CalcHEP package, and includes a GTK+ GUI.
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  • 16

    md-utils

    Utilities to analyze molecular dynamics data

    md-utils is a set of command line tools written in C designed to perform certain operations and analysis on the molecular dynamics data. The supported operations involve trajectory coordinate transformation to the COM system, Cartesian coordinate transformation to selected internal coordinates and to projected normal mode coordinates, trajectory merging, selecting subsets of trajectory frames, selecting subsets of atoms, permuting atoms, etc.
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