639 projects for "java open source" with 2 filters applied:

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  • 1

    RaTrav

    mean first passage times and node occupancies calculations

    RaTrav tool was designed to support computational biology studies where mean first-passage times (MFPTs) between initial and single or multiple final states in network-like systems are used. The tool approves arbitrary networks (graphs) where a dynamics of the Markovian type takes place. Two methods are made available for which their efficiency is strongly dependent on the topology of the defined network: the combinatorial Hill technique and the Monte Carlo simulation...
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  • 2

    Molcrunch

    An atomic or molecular electronic properties computational package

    THE NEW, 11/7/2013 VERSION OF MOLCRUNCH IS HERE Molcrunch is an atomic or molecular electronic properties computational package. It provides Gaussian and Slater orbital support for SCF, MCSCF, and orthogonal or nonorthogonal orbital CI calculations. Its most sophisticated feature is a configuration manipulation CI package that provides symmetry filtering, orbital occupation selection, and a choice of many other wave function and/or basis characteristics. The symmetry filtering...
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  • 3
    Simcas is a simple and very flexible analog simulator. SimCAS uses symbolic equations to define components and solves the net system by using a "Computer Algebra System" algorithm.
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  • 4
    pyPENELOPE
    An application programming (API) and graphical user interface (GUI) to facilitate the use of PENELOPE's program PENEPMA.
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    Downloads: 21 This Week
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  • 5
    Hy3S uses advanced MPI parallelized hybrid stochastic simulation methods to quickly compute the dynamics of biochemical networks with thousands of species/reactions. Many features included (see Home Page). An easy-to-use GUI (Matlab req) is included.
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  • 6

    iAIDA

    iAIDA is a C++ implementation of the AIDA interfaces.

    iAIDA is an implementation in C++ of the AIDA Abstract Interfaces for Data Analysis, a set of interfaces designed for data analysis. Initially designed for use in experimental and theoretical physics, the AIDA interfaces can also be used in other fields.
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  • 7
    TMVA Toolkit for Multi Variate Analysis

    TMVA Toolkit for Multi Variate Analysis

    A ROOT-integrated toolkit for multivariate analysis

    TMVA is a ROOT-integrated toolkit for multivariate classification and regression analysis. TMVA performs the training, testing and performance evaluation of a large variety of multivariate methods. Since 2013, TMVA has been fully integrated with ROOT and is distributed as part of it. The new homepage of TMVA is https://root.cern
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  • 8
    NSB entropy and mutual information estimator; applications to the analysis of neural code.
    Downloads: 2 This Week
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  • 9
    Handles Hexahedral, Tetrahedral, Quadrilateral, and Triangle meshes. Lagrangian, Hierarchic, and Monomial finite elements. Interface to PETSc solvers, adaptive mesh refinement, and extreme portablility.
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  • 10

    InterferenceSimulator

    Demonstrates quantal two-slit Fresnel interference patterns.

    InterferenceSimulator is a program demonstrating quantal two-slit Fresnel interference patterns with one, the other, or both slits open. A magnetic flux situated between the two slits allows demonstration of the Aharonov–Bohm effect. Simulations with short de Broglie wavelengths illustrate the classical limit of quantum mechanics. Because of the universality of wave phenomena, this program can also demonstrate the geometrical-optics limit of wave optics for small wavelengths.
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  • 11
    MPQC

    MPQC

    Massively Parallel Quantum Chemistry program

    The Massively Parallel Quantum Chemistry program, MPQC, computes properties of atoms and molecules from first principles using the time independent Schrödinger equation.
    Downloads: 2 This Week
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  • 12

    fit2dcorr

    SAXS 2D > 1D data reduction software, wrapper for Fit2D

    The project's repository has moved to github. Please use the repository at https://github.com/Niels-Bohr-Institute-XNS-StructBiophys/fit2dcorr for the new updated versions. The old version is kept at sourceforge. Keywords: fit2d SAXS azimuthal averaging batch processing absolute units (exposure time, transmission, sample thickness) error bars C++ Unix OpenMP
    Downloads: 2 This Week
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  • 13
    Maximum packing densities for individual, polydisperse (diameter), ellipitic platelets and stacks of them (max 5 platelets per stack implemented). Size fractionating for stacks (platelets with diameters below a cut-off diameter remain as individual platelets all others assemble in stacks) can be included. Considers only hard interactions and assumes spherical exclusion volumes.
    Downloads: 0 This Week
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  • 14

    X-Freq

    X-Ray Reflectivity Frequency Analysis

    Analyze the thicknesses of a sample from an x-ray reflectivity dataset using Fourier Transform techniques.
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  • 15
    namespace ewalena is a set of tools for state space calculations in quantum mechanical problems.
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  • 16
    NTC thermistor library
    The project offers support for NTC thermistor calculations. The Steinhart-Hart equation is a mathematical model for these thermistors. Software to calculate the coefficients based on temp-resistance tables and functions allowing conversion are provided.
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    Downloads: 7 This Week
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  • 17
    exp2plt
    The main scope of the program is to take Thermo-Calc or Dictra (both registered trademarks) and transform them into nicely formatted encapsulated postscript diagrams, generated by gnuplot. But exp2plt can also be used as a graphical interface to gnuplot.
    Downloads: 0 This Week
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  • 18

    psicode

    An open-source quantum chemistry program package

    PSI is an open-source program for computing molecular properties using high-accuracy, ab initio, quantum mechanical models.
    Downloads: 3 This Week
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  • 19

    qxcavate

    Reciprocal Space Mapping of X-Ray Diffraction Data

    Reciprocal Space Mapping of X-Ray Diffraction Data taken with 2 dimensional detectors using the rotation method
    Downloads: 0 This Week
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  • 20

    QTASEP

    Visualization application for various TASEP, ASEP and SSEP models.

    Visualization of TASEP, ASEP, SSEP models with various update rules based on Zarja simulation library using QT GUI library.
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  • 21
    MNDACS - Java Control System
    MNDACS (Mesh Networked Data Acquisition and Control System) is a Java, network based control system. The project approach is to build a mesh system to tolerate control unit breakdowns with load balancing between units.
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  • 22
    Acquisition software for electron microscopes. Runs on FEI Tecnai and Titan microscopes and is usable in material and life science applications
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  • 23
    LibCPIXE is a library for simulation of Particle Induced X-ray emission spectra.
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  • 24
    NanoHive Nanospace Simulator
    NanoHive is a modular simulator used for modelling the physical world at a nanometer scale. The intended purpose of the simulator is to act as a tool for the study and development of nanotech entities. The project will also focus on the simulation of complex biological applications such as Targeted Drug Delivery by simulating nanowires, magnetic nanoparticles and others. Updates will follow from January 2017.
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  • 25
    lagrange_simulation_mechanics

    lagrange_simulation_mechanics

    simulations with Lagrangian method,both symbolic and by numeric deriv

    alleged to the video 'tutorial' "the Mechanics and its Simulation". Simulation with Lagrangian method, both symbolic, and by numerical derivation. All well-grouped in folders. there is also a 'review' in 3 demos of the Newtonian dynamics: mass-spring systems. most of progs are written in C, with use of SDL lib to display simple graphics and have real-time interactivity. As to programming complexity, it's very simple... this all aims at classical physics simulation in a simple but efficient...
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