Search Results for "tree software"
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Showing 29 open source projects for "tree software"
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Fink
macOS package manager
Fink brings the full world of Unix Open Source software to Darwin and macOS. Packages are downloaded and built automatically and installed into a tree managed by dpkg, all with full dependency tracking. -
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contools
console tools, batch scripts, shell scripts, shell tools, utilities
https://sourceforge.net/p/contools/contools/ci/master/tree/README.md https://sourceforge.net/p/contools/contools/ci/master/tree/README_EN.txt https://sourceforge.net/p/contools/contools/ci/master/tree/README_EN.deps.txt https://sourceforge.net/p/contools/contools/ci/master/tree/changelog.txt -
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Ftagshtml
FORTRAN and Fortran 90 HTML browsing with indexes.
Ftagshtml converts fortran code into HTML in order to browse and navigate in the call tree for any routine or abstract fortran 90 interface. Compatible with basic C analysis, mixing with fortran 77 and 90. -
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TaxOnTree
A program for associating taxonomic information in a phylogenetic tree
TaxOnTree is a phylogenetic program for associating Taxonomic information in a phylogenetic tree. The output is a NEX format tree file configured to be opened in FigTree, that users can promptly color by any taxa or by the ancestrality shared by sequences with query. Input can be a Fasta formatted file to be used in a BLAST search or a list of sequences represented by their identifiers (UniProtAC or NCBI gi), if a cluster is already available. Also, a newick file produced with user software... -
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makepp
GNU make compatible but reliable and simpler build tool
... improved handling of builds that involve multiple makefiles (recursive make is no longer necessary); automatic scanning for include files; rebuild triggered if build command changes; checksum-based signature methods for reliable builds, smart enough to ignore whitespace or comment changes; extensibility through Perl programming (within your makefile); repositories (automatically importing files from another tree); build caches (not recompiling identically what a user of the same cache already did -
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PhyloTrack
PhyloTrack, D3.js and JBrowse for phylogeny and positioning of samples
PhyloTrack is a JavaScript--based software tool that integrates the D3.js library for data visualization with the JBrowse tool for genome browser representation. It requires a phylogenetic tree of the common Newick data format as input, as well as three meta data files for samples, clade-defining nodes and clade color definitions - all in tab delimited format. Functionality within PhyloTrack shows the informative markers at each node in the phylogenetic tree, therefore highlighting clade... -
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gitslave
Coordinated multi-repository super-projects for Git
Gitslave is a script for coordinated version control of large projects combining code from multiple independent repositories using Git. More flexible than traditional git submodules, gitslave provides a simple wrapper around command-line git that manages a directory tree with multiple subsidiary ("slave") git repositories in sub-directories of a "master" git repository. Any git command run from the "gits" wrapper will be performed in all the git repositories; for example gits checkout -b... -
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Plinko was originally an experiment with Prefix Trees and log parsing. The general concept is to have a single end point you can send any data to, in a "fire and forget" fashion. Plinko should identify and parse the data completely without the sending system caring what it sent. The latest version supports named fields in the STL files for tagging data parsed in the Prefix Tree and anonymous functions for parsing dynamic message payloads. We now output JSON objects and I'm working on HBase...
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livemix
A tool for automated downmixing of live multitrack sound recordings
Livemix will search directory tree for audio files, assuming each of them is a separate track, then group them into sessions based on file size, and then create a downmix for each session. Silent tracks are ignored, the others are processed by applying some effects such as compand, then normalized and then combined into downmix with equal volume. Sessions are named by the time of recording in YYYYMMDD-HHMMSS format. Intended use is to quickly generate mp3 previews of live multitrack... -
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hrefinder
Detection of homologous recombination events from SNP data
This software detects homologous recombination events (HREs) from SNP data. Based on SNP alleles calls and locations, it breaks the genomes into locally colinear blocks, and looks for cases where SNPs do not agree with the vertical pattern of inheritance in a phylogeny. It applies a dynamic programming algorithm to model whether changes within a block are likely a result of mutations, sequencing errors, or HRE. We use information from the nearby SNPs, so that if 1-2 alleles in a series of SNPs... -
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... to access an archive of this code, you may find it here https://github.com/awslabs/mturk-legacy-sdks/tree/master/perl-sdk.
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Recursive LDD
Recursive implementation of List Dynamic Dependencies (LDD)
Recursive LDD (recursive-ldd) is a Perl script that allows displaying a tree-like hierarchy of shared library dependencies. The script calls on the standard Linux ldd utility in a recursion for every listed binary and library. It completes running when no matches are found in the current branch. It can also print unique values only as well as environment variables that affect the loading of libraries: LD_LIBRARY_PATH and LD_PRELOAD. Same limitations to standard ldd apply. Recursive-ldd cannot... -
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If you manage phylogenetic data, Bio::NEXUS can make your life easier with a library and ready-made tools to manipulate and visualize NEXUS files (see http://www.molevol.org/nexplorer and http://search.cpan.org/dist/Bio-NEXUS/doc/Tutorial.pod).
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Software to analyze terraces in phylogenetic tree space, including PERL and C code to enumerate, characterize and visualize terraces.
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Build scripts/wrappers around the YUI Compressor implemented for popular languages like PHP, Python, Java, Bash, Perl, etc. The scripts will track down and compress all JavaScript and CSS files within a given project tree.
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FAST(Flowchart Abstract Syntax Tree) SDK is a development toolkit built upon Eclipse RCP and GEF to visualize the process of converting unstructured flowcharts in to structured ones.
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Jubjub is a decision tree based framework for automating *NIX administrative processes and reacting to events. Working well with a network monitor such as Nagios, you can expose, document, and add notifications to scripts in one step.
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The Patch Lifecycle Manager (PLM) provides a central point for tracking the lifecycle of patches against a source tree. Regardless of the RCS type system used by the developer to track development of the patch (CVS, Subversion, BitKeeper, or by hand...)
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pcons is a new variant of the old 'cons' build tool that allows you to do parallel compilations of each library in a build tree. It is based on cons 2.2.1 1.129. It is very stable and has been in use for more than 2 years.
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tardiff is a perl utility that enables easy patch creation for two different versions of a build/install tree in tarball format. tardiff uses advanced mechanisms to determine differences (visit homepage for a thorough description).
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Ports Tree Explorer (PTE) is a small tool that allows you to navigate through your /usr/ports tree, showing you information about a selected port, tree view, software categories (/usr/ports main dirs) and finaly allows you to install a selected port.
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This project is for manipulating and querying data as Structured tags (Stags), a simple XML-like tree data structure. This project contains two modules for parsing, manipulating and query stags and also for relational/SQL mapping
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The Perl Oak Component tree is a implementation of a complete framework for designing enterprise applications. Includes: The Oak framework, the Forest Web Application Builder (a Web Interface to create Web interfaces) and OakXP, a XP project manager.
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ExplorerIndex is a Perl driven indexing script, that creates a sitemap, and/or/including a table of contents for specified files/directories. It produces a static or dynamic page with a Javascript tree control, html-template and cookie driven.