Search Results for "source code data mining"
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Showing 77 open source projects for "source code data mining"
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1
CVPR / ICCV LaTeX Template
Extended LaTeX template for CVPR/ICCV papers
This repo contains quickstart code for writing CVPR/ICCV papers in LaTeX. It is a direct extension of the official template (for CVPR 2022 and beyond) and is submission-ready. Up-to-date for CVPR 2024. -
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LaTeX-g7-32
LaTeX template for preparing research reports and calculation
... layouts for LyX (an editor in which editing is more like working in Microsoft Word than writing LaTeX code, but the result is just as good as in LaTeX). To use LyX you also need to copy the LaTeX styles (from the tex folder). -
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fwknop
Single Packet Authorization, Port Knocking
fwknop stands for the "FireWall KNock OPerator", and implements an authorization scheme called Single Packet Authorization (SPA). This method of authorization is based around a default-drop packet filter (fwknop supports iptables and firewalld on Linux, ipfw on FreeBSD and Mac OS X, and PF on OpenBSD) and libpcap. SPA is essentially next-generation port knocking (more on this below). The design decisions that guide the development of fwknop can be found in the blog post "Single Packet... -
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XMLTV
XMLTV obtains and processes TV listings data
XMLTV is a set of programs to process TV (tvguide) listings and help manage your TV viewing, storing listings in an XML-based format. There are utilities to download TV listings for many countries, filter programs and Perl libraries to process listings. Our code is now available on Github at https://github.com/XMLTV/xmltv and new issues should be reported at https://github.com/XMLTV/xmltv/issues -
Comet is a flexible backup platform, giving you total control over your backup environment and storage destinations.
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Quiz/Survey/Test - QST
A Free, complete, enterprise grade, open source exam management system
QST, the worlds unparalleled open source online/lan assessment software. From a quick quiz on your phone to very large scale, high stakes, proctored desktop testing, we make it easy/secure/economical. Our intuitive design contains features (Immediate detailed results, Create/Export/Import/Convert Questions, WYSIWYG/Math-Chemistry/Basic Editors, Question/Item Bank, Multiple Question Types, Multiple Delivery Styles, Multiple Delivery/Results Options, Adaptive/Branching Questions, Randomly Chosen... -
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android-backup-toolkit
Collection of several utilities to work with android backups
Project name: android-backup-toolkit URL: https://sourceforge.net/p/android-backup-toolkit/ License: various (see individual projects) Authors: various (see individual projects) This project is simply a compilation of the six following projects, both latest source code and binaries: * android-backup-extractor: https://sourceforge.net/projects/adbextractor/ * android-backup-splitter: https://sourceforge.net/p/adb-split/ * android-timestamp-keeper: https://sourceforge.net/projects... -
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CSI-Math-Notation-PostfixInfix
Perl Lib Math Notation
* Introduction: - This Module is a Library based Perl code. - The library provide: - Convert INFIX expressions to POSTFIX; - Convert POSTFIX expressions to INFIX and; - Perform POSTFIX context validations. - Context validation can be implemented in item selection routines or data context validation, when it is possible to identify data to be selected or ignored in some data analysis process. * Support: The Support Service is FREE. Do you need support? Open... -
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BIGSdb
Software for storing and analysing bacterial sequence data
.... These loci can be further organised into schemes for isolate characterisation or for evolutionary or functional analyses. See Jolley and Maiden 2010, BMC Bioinformatics 11:595 (http://www.biomedcentral.com/1471-2105/11/595). You can report bugs or make enhancement requests using the issues tracker at https://github.com/kjolley/BIGSdb. The source code is also mirrored there. -
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Easyspider - Distributed Web Crawler
Easy Spider is a distributed Perl Web Crawler Project from 2006
Easy Spider is a distributed Perl Web Crawler Project from 2006. It features code from crawling webpages, distributing it to a server and generating xml files from it. The client site can be any computer (Windows or Linux) and the Server stores all data. Websites that use EasySpider Crawling for Article Writing Software: https://www.artikelschreiber.com/en/ https://www.unaique.net/en/ https://www.unaique.com/ https://www.artikelschreiber.com/marketing/ https://www.paraphrasingtool1.com... -
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Arexx Data Logger UI
A web UI to Arexx temperature loggers
This project aims at displaying and analysing data recorded by Arexx temperature loggers on Unix operating systems. Although the code is currently implemented for etching data from Arexx loggers, the UI itself is completely independent and can be reused with other temperature databases. -
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C-squares
Concise spatial query and representation system (c-squares)
C-squares is an easily implemented method for storage, querying and display of spatial data locations, based on a hierarchical, grid-based representation of the Earth' surface. Source code for encoding, decoding, mapping, etc. is provided via this site. Additional support is available by contacting the system developer, Tony.Rees@marinespecies.org; see also the c-squares home page at http://www.cmar.csiro.au/csquares/ . -
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COHCAP
City of Hope CpG Island Analysis Pipeline
COHCAP (City of Hope CpG Island Analysis Pipeline, pronounced "co-cap") is an algorithm to analyze single-nucleotide resolution methylation data (Illumina 450k methylation array, targeted BS-Seq, etc.). Please note: 1) The SourceForge version of COHCAP is no longer being updated. Please see the GitHub version: https://github.com/cwarden45/COHCAP This was the source repository for the Bioconductor version, with some changes after the decision to only provide the code through GitHub... -
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SequestGUI
GUI front-end to sequest.exe
GUI front-end to sequest.exe proteomics search engine, developed in Perl. For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/sequestgui/code/ci/default/tree/README.md - Gallardo, Ó., Ovelleiro, D., Gay, M., Carrascal, M., & Abian, J. (2014). A collection of open source applications for mass spectrometry data mining. PROTEOMICS, 14(20), 2275–2279. https://doi.org/10.1002/pmic.201400124 -
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Integrator
Integrates proteomic searches from multiple search engines
Perl program that integrates proteomic searches from multiple search engines, and outputs LymPHOS2 input proteomic data file. For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/integrator/code/ci/default/tree/README.md - Gallardo, Ó., Ovelleiro, D., Gay, M., Carrascal, M., & Abian, J. (2014). A collection of open source applications for mass spectrometry data mining. PROTEOMICS, 14(20), 2275–2279. https://doi.org... -
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OmssaGUI
GUI front-end for OMSSA
GUI front-end for the OMSSA proteomics search engine. For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/omssagui/code/ci/default/tree/README.md - Gallardo, Ó., Ovelleiro, D., Gay, M., Carrascal, M., & Abian, J. (2014). A collection of open source applications for mass spectrometry data mining. PROTEOMICS, 14(20), 2275–2279. https://doi.org/10.1002/pmic.201400124 -
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FastaTools
Performs several operations to Fasta protein databases
...., & Abian, J. (2014). A collection of open source applications for mass spectrometry data mining. PROTEOMICS, 14(20), 2275–2279. https://doi.org/10.1002/pmic.201400124 -
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XSH is a powerfull command-line XML editing tool/programming language in the manner of Unix shell interpreters and line-oriented text editors like ed which can be used either interactively or for batch-mode XML processing.
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As of 2018-06-28, this project has moved to https://github.com/AdamaJava. This copy of the code will remain but all new code updates and releases will be from the new site. Java code developed by the Australian ICGC team for operating on next-generation sequencing data. This code is currently being maintained and expanded by the QIMR Berghofer Genome Informatics team (http://www.qimrberghofer.edu.au/lab/genome-informatics/) More details and documentation can be found on the wiki: http...
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CSBB-v3.0
CSBB - Computational Suite for Bioinformaticians and Biologists
CSBB is a command line-based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R, java, python and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux, UNIX... -
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CSBB-v2.1 [CSBB-v3.0 is now available]
Computational Suite For Bioinformaticians and Biologists
CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R, java and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux, UNIX... -
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Flame Graphs
Stack trace visualizer
Flame graphs are a visualization of profiled software, allowing the most frequent code-paths to be identified quickly and accurately. They can be generated using my open source programs, which create interactive SVGs. See the Updates section for other implementations. Recently I've been helping with d3-flame-graph. The x-axis shows the stack profile population, sorted alphabetically (it is not the passage of time), and the y-axis shows stack depth, counting from zero at the bottom. Each... -
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MisterHouse is a Windows/Unix home automation program written in Perl. It can respond to voice commands, web browsers, time of day, serial port and X10 data, external files, etc and can speak via Text to Speech engines. Support is on https://sourceforge.net/p/misterhouse/mailman/misterhouse-users/ and code is maintained on https://github.com/hollie/misterhouse
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Network Tracking Database
Track your ARP/MAC table changes and so much more
The Network Tracking Database (NetDB for short) tracks all changes to the MAC address tables on your switches and the ARP tables on your routers over time stored in MySQL. It supports extensive switch, VLAN and vendor code reports from a CLI or Web App. NetDB can generate CSV reports, track the usage of static IP addresses, record neighbor discovery data and much more. There is now a VM "appliance" with easier upgrades available in the Files section. See the http... -
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CSBB-v2.0
Computational Suite for Bioinformaticians and Biologists
CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R, java and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux, UNIX... -
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ViralFusionSeq [VFS]
Accurately discover viral integration events and fusion transcripts
.... VFS combines soft-clipping information, read-pair analysis, and targeted de novo assembly to discover and annotate viral-human fusion events. A simple yet effective empirical statistical model is used to evaluate the quality of fusion breakpoints. Minimal user defined parameters are required. Source code with user manual and installation guide of VFS is available at sourceforge's "Files" section. Citation: http://www.ncbi.nlm.nih.gov/pubmed/