Search Results for "nine"

BSpipe is a comprehensive pipeline from sequence quality control and mapping to functional analysis of differentially methylated regions: (1) sequencing quality assessment, (2) sequence cleaning, (3) sequence read mapping, (4) methylation quantification, (4) sample comparisons based on methylation profile, (5) identification of DMRs (differentially methylated regions), (6) annotation of DMRs, (7) functional analysis of differentially methylated genes, (8) generation of input files for visualization, and (9) support for advanced sequencing technologies such as TAB-seq, OxBS-seq, MAP-it, and NOMe-seq.

....*, Gantman, E.C., Mele, A., Darnell, J.C., Darnell, R.B. 2014. Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis. Nat Protocols, 9:263-293. Zhang,C.†, Darnell, R.B.† 2011. Mapping in vivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data. Nat. Biotech. 29:607-614.

A Bacula web-based management interface for SME (http://contribs.org) distribution and bacula packages Project has been made by ASPerience (http://www.asperience.fr/pole-systeme-et-reseaux/sauvegarde) for SME. Product is internally maintained. We have repackaged for SME 9.x and both bacula and bareos (https://sourceforge.net/projects/smeserver-bareos/). 1.4 is for SME SERVER 9.0 1.3 is for SME SERVER 7.4 Full set of screenshots: https://plus.google.com/photos/110107797324512983755/albums/6078551068603641249 Version for SME 7.4 was delivered with a patch for a new way of managing backups for notebooks (notebook opens a socket to director to pass through firewalls thus allowing to backup while notebook is away). ...

iMS2Flux is a command line based high-throughput processing tool set for stable isotope labelled mass spectral data targeting metabolic flux analysis. To get started simply download and unzip the iMS2Flux.zip file and follow the getting started document for your OS. Current version 7.2.1 (last updated 9/30/2014) - Completes support and correction functionality for a new user specified generic data class. See the change log for full details.

Maldonado E, Khan I, Philip S, Vasconcelos V, Antunes A (2013) EASER: Ensembl Easy Sequence Retriever. Evolutionary Bioinformatics, 9:487-490. doi: https://doi.org/10.4137/EBO.S11335.

Development has moved: https://github.com/jeagle/bind-dlz-perl BIND 9 dynamically loadable zone (DLZ) plugin embedding a Perl interpreter in BIND, allowing Perl scripts to be written to integrate with BIND and serve DNS data. Current version supports BIND 9 dlopen interface and BIND 9.9 clientinfo extensions.

RFC 1924 describes a compact, fixed-size representation of IPv6 addresses which uses a base 85 number system. The base 85 numbers (from 0 to 84) are as follows: 0..9 A..Z a..z ! # $ % & ( ) * + - ; < = > ? @ ^ _ ` { | } ~ In order to let human beings pronounce the resulting string more easily and to be able to use base 85 encoding in DNS naming schemes, an alternative encoding scheme is used, based on 85 consonant-vowel pairs, as suggested by DGolden on Slashdot (http://tech.slashdot.org/comments.pl?...

RIPCAL is a bioinformatics tool for the analysis of repeat-induced point mutation (RIP) of fungi. If you publish work using RIPCAL please cite: Hane & Oliver, BMC Bioinformatics 2008, 9:478

...Craig Venter Institute. See: Li K, et al. "Novel computational methods for increasing PCR primer design effectiveness in directed sequencing". BMC Bioinformatics 2008, 9:191.

RanBunHyou is a Q&D generator of BINGO-like word games and other randomized teaching materials from plain text files. Entertains children studying vocabulary, etc. For Java 2+ (jre1.4+) and Macintosh System 7 to 9, being re-written in perl/CGI.

MacPerl supports the Perl programming language on Mac OS (not Mac OS X). Mac OS 8.1 - 9.x are supported; 7.5.5 is supported by the MPW tool and older versions of the app. 5.6.1r2 is the current version (based on perl 5.6.1); MacPerl 5.8 is in development

A free multilanguage self-learning translator & dictionaries. Command-line & GUI. Requires Perl. Runs on Unix, Linux, Windows, Mac OS 9, Mac OS X.

BIND 9 dynamic DNS webmin module. This module supports both static and dynamic zones, and IPv4 and IPv6 addressing in both forward and reverse zones.

This small perl utility renames all files and all subdirectories from a given startdirectory and downwards in more readable filenames: Only the characters a-z, 0-9, underline, dash, and point are allowed. Multiple spaces and german umlauts will be replace

A free language translator currently supporting 53 languages from Afrikaans to Vietnamese. Command-line only. Requires Perl. Runs on Unix, Linux, Windows, Mac OS 9, Mac OS X. Best supported languages are Spanish, Swedish, Malaysian, then German.

Naquela will analyse your BIND 8 or 9 query logs (they're easy to set up). It can split results by domain asked for, by originating IP, by day, by hour, whatever you want.

The K9Toolkit is a miscellaneous collection of open source tools written using the KStat library on a Solaris 9 server, mostly in Perl. They actually work on Solaris 8 or newer. This toolkit may help locate performance bottlenecks.