Search Results for "molecular dynamics matlab"

Showing 8 open source projects for "molecular dynamics matlab"

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  • 1

    Newton-X

    Newtonian dynamics near the crossing seam

    NX is a program for nonadiabatic molecular dynamics in the electronic excited states. It is based on the surface hooping approach.
    Downloads: 0 This Week
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  • 2
    Elastic network models (ENMs) have been shown to generate the dominant functional equilibrium motions of biomolecules quickly and efficiently. MAVEN simplifies ENM generation, allows for diverse models to be used, and facilitates useful analyses.
    Downloads: 2 This Week
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  • 3
    allink

    allink

    Software for data analysis, image processing, simulations, solver.

    Collection of utilities based on two basics classes: Matematica and VarData. Matematica) performs math operations on vectors and matrices for smoothing, interpolation, convolution, image processing... VarData) manipulate a structure of points connected by links. Addraw) openGL engine. ElPoly) analyze mechanical properties of polymer and membrane like structures. Addyn) perform molecular dynamics and Monte Carlo simulations and has a solver for 4th oder PDE. Avvis) perform all...
    Downloads: 0 This Week
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  • 4
    A user friendly front-end for molecular dynamics
    Downloads: 0 This Week
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  • 5
    This project contains a custom version of the GROMACS molecular dynamics software package that helps users to choose parameters for the PME electrostatics model which produce a known error in the PME approximation for minimal computational cost.
    Downloads: 0 This Week
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  • 6
    ProgPorts is an administrative and easy user interface to hundreds of proteomics, molecular dynamics, and protein crystallography programs. It is a hybrid of the prog/setup system, developed at Johns Hopkins University, and GNU-Darwin ports system.
    Downloads: 0 This Week
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  • 7
    This project aims to develop a cross platform environment for utilisation of various open source and freely available molecular dynamics and bioinformatics tools. Some extra features are included such as protein hydrophobicity and hydrophilicity plots.
    Downloads: 0 This Week
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  • 8
    Plotamber is a Perl script for an easy and automated plotting of properties derived from molecular dynamics or minimization calculations done with Amber, NAMD or Charmm.
    Downloads: 0 This Week
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