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Tool for extracting plain text from TeX and LaTeX sources
Improved version of Detex, tool for extracting plain text from TeX and LaTeX sources. OpenDetex is a program to remove TeX constructs from a text file. It recognizes the \input command. This program assumes it is dealing with LaTeX input if it sees the string "\begin{document}" in the text. It recognizes the \include and \includeonly commands.
Transposable Element annotation using Next-Generation Sequencing data
The T-lex package contains two pipelines. The T-lex pipeline calls presence/absence of known TE insertions using re-sequencing data. On top of the genotyping, this pipeline also allows to re-annotate TEs and discover traces of transposition events called Target Site Duplication (TSD).
The other T-lex pipeline discovers and annotates de novo TE insertions.
http://petrov.stanford.edu/cgi-bin/Tlex.html
Given YACC-like and LEX-like input files, yagg generates a C++ program that generates all strings of a user-specified length. yagg is easy to use, and provides a means of generating test inputs or validating a parser grammar by inspecting the strings.