Showing 2 open source projects for "finite element in java"

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    RE2/J

    RE2/J

    linear time regular expression matching in Java

    RE2/J is a high-performance regular expression engine implemented in pure Java as a port of Google’s C++ RE2 library. Unlike traditional regex engines such as Java’s java.util.regex, PCRE, or Perl’s implementation—which rely on backtracking and can suffer from catastrophic exponential runtimes—RE2/J guarantees linear-time matching relative to input size. It achieves this efficiency by simulating all possible matches in a single pass using a nondeterministic finite automaton (NFA), ensuring predictable and safe performance even with complex patterns. ...
    Downloads: 0 This Week
    Last Update:
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  • 2

    TE-locate

    a tool for calling transposons

    TE-locate is a tool to locate all copies of sequences in a reference sequence using read-pairs. TE = Transposable Element Input is NGS-data. Please download all files first (including the demo data) and make your first run then.
    Downloads: 1 This Week
    Last Update:
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