Search Results for "define"

...Sequence data can range from single sequence reads to multiple contigs generated by whole genome sequencing technologies. The system incorporates the capacity to define and identify any number of loci and genetic variants at those loci within the stored nucleotide sequences. These loci can be further organised into schemes for isolate characterisation or for evolutionary or functional analyses. See Jolley and Maiden 2010, BMC Bioinformatics 11:595 (http://www.biomedcentral.com/1471-2105/11/595). ...

...The toolkit includes utilities like rcup (install/update symlinks), mkrc (add a file to your dotfiles), lsrc (list managed files), and rcdn (remove links), each built to be safe and idempotent. A single ~/.rcrc config lets you define tags, host-specific settings, and multiple dotfile directories, enabling different machines to share a core setup while keeping local variations. rcm backs up or skips conflicting files, supports dry runs, and respects ignore lists, so you don’t accidentally clobber personal data. By turning machine bootstrap into one or two commands, it helps teams and individuals keep shells, editors, and tools consistent without ad-hoc scripts.

Detecting allelic biases from high-throughput sequencing data requires an approach that maximises sensitivity while minimizing false positives. Here we present Allelome.PRO, an automated userfriendly bioinformatics pipeline, which uses high-throughput sequencing data from reciprocal crosses of two genetically distinct mouse strains to detect allele-specific expression and chromatin modifications. Allelome.PRO extends approaches used in previous studies that exclusively...

...It defaults to searching only relevant files while skipping build artifacts, VCS directories, minified bundles, and other noise, which dramatically reduces false hits. Filetype filtering is first-class: you can target languages by name (--perl, --python, --js) or define your own groups, and ack maps common extensions automatically. Results are colorized with context options, PCRE regular expressions are supported, and output is tuned for quick scanning across many files. The tool respects .gitignore and its own ignore mechanisms, and it offers sensible defaults that require minimal flags for day-to-day use. ...

Quickly define your ORM with the simple Brainstorm format, then instantly create your SQL, Java, PHP, Python, Perl, even C++, etc. code to manage all your object relationships.

gRSShopper is an application that allows you to define your own community of RSS feeds, aggregates content from those feeds and organizes it, and helps you integrate that content into your own posts, articles and other content.

The goal of this project is to define a minimal programming language which can be implemented very easily on any platform.

Business intelligence tool to create reports, drill-down into an aggregated data set (database table or view) and define available data points without coding.

GeniusTrader aims to be a full featured toolbox for creating stock market trading systems based on Technical-Analysis methods. GeniusTrader implements trading systems defined in terms of: specific entry-exit points, current cash, current positions, trade type and most traditional technical analysis indicators. Market data time-periods range from ticks to years. Backtesting defined trading systems as well as tools to develop and test technical market indicators are provided. Visit...

A firewall configuration project based on Linux 2.6.x and iptables. It has a web interface with an intuitive Webmin module, or you can edit a XML file. You can define the different firewall elements (zones, hosts, networks) and then set the services

YATT.pm (or YATT) is Yet Another Template Toolkit for Perl. Like PHP (and unlike HTML::Template), YATT.pm converts each template into (executable) Perl package(class) so that you can define subs to build up your own abstraction architecture.

This project tries to define rules of music library hierarchy like file names, directory hierarchy, data formats and more.

A Perl took-kit, to make creating database-web-apps quick and easy, while keeping the option to turn it into a custom professional web-app. To start off, you'll only have to define your objects (name, attribs, etc.)

This project aims to add the ability to create a graphical user interface (gui) dinamically for Perl programs. Main features are the ability to specify gui of programs on external files and the usage of a simple script language to define navigation.

Peon is a wrapper that automatically runs UNIX shell commands in a row (batch). Peon saves the return value, STDOUT and STDERR of each command. The front output is meant to be lean and mean, yet peon warns if any action failed or produced errors.

VNUML is a virtualization tool designed to quickly define and test complex network simulation scenarios based on the great User Mode Linux (UML) virtualization software.

A database content management system for website content that uses XML files to define the management interface for tables in a database systems schemata. Designed to run on PHP 5.

sqlpp is a conventional cpp-alike preprocessor taught to understand SQL syntax specificities. In addition to the standard #define/#ifdef/#else/#endif cohort, provides also #perldef for calling arbitrary perl code.

EyeLog is a flexible and extensible log analyzer for any type of log file. It allows one to define custom regular expressions (perl-style) for pattern matching and custom printf formats for reporting. The goal is to provide a universal log analysis tool.

Worklog allows you to track the work you do in various projects and tasks within them. You define projects and tasks, and then file progress reports on tasks as you go along. Monitors time remaining on tasks and projects.

WPP is a small perl5 script that allows preprocessing of html files. You can define variables, which are abbreviations for longer constructs, and include common html fragments. It's useful for giving an uniform layout to different html pages.

Perl-script that generates a web-page (dhtml, css) with real-time web-statistics for game-servers (half-life, quake3) with help of commandline tool qstat (or quakestat). Visitors can define what server(s) and which information will be displayed

The Apache Toolkit ( atool ) is a web site management system from where webmasters can define templates, authentication options and do banner management. It's for people with not much time to code all this stuff from the ground up.

Information wants to be free. Money is fundamentally information. Open Money allows anybody to define their own currency, thus setting money free. This project extends the work done by initiatives such as LETS and others.

This is an editor for developing the zone, world, mobile, and object files that define an area in a diku MUD. Designed for Gizmo MUD.