Search Results for "gnu/linux" - Page 70
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Showing 7986 open source projects for "gnu/linux"
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A fork of pidgin which aims to provide minor features that have not been addressed by the pidgin development team (including manual textbox resizing). See funpidgin.sf.net for details.
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rebind
Lattice simulation of biochemical reactions and diffusion
This site hosts code investigating the role of spatial heterogeneity in biochemical signaling. Motivated by several biological examples, we study the behavior of covalent modification networks when the activating component is localized to a planar membrane in either a random or clustered configuration. Reactions and diffusion are implemented on a three-dimensional lattice. -
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BIGrat
A genome assembly tool for pyrosequencing-based re-sequencing
BIGrat: a genome assembly tool for pyrosequencing-based re-sequencing -
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PerlPrimer is a GUI application written in Perl that designs primers for standard PCR, bisulphite PCR and Real-time PCR (QPCR). It aims to automate and simplify the process of primer design.
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NConf is a PHP based web-tool for configuring the Nagios monitoring software. It differs from similar tools by offering enterprise-class features like templates, dependencies and the ability to configure a large-scale, distributed Nagios topology.
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HPCall
Improved base-calling for homopolymer-sensitive next-gen data.
The current software contains the implementation for the 454 pyrosequencing platform. -
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yp2ldap
NIS-to-LDAP translation tools
Replacement versions of ypwhich, ypcat and ypmatch that simulate the original NIS commands but obtain their data from LDAP entries defined with the RFC2307 schema. -
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Eggdrop is the most advanced IRC robot available. It has been under development since December 1993, and unlike most other bots, it is still regularly updated.
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nagboard
A status scoreboard for Nagios
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A bioinformatics tool to identify and remove rRNA sequences from metagenomic and metatranscriptomic datasets. The rRNA-like sequences are classified by domain, subunit. and bacterial phyla. Coverage plots for the top hits are provided as well.
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coords-view
Graphically displays nucmer/mummer mapping results
Displays mummer/nucmer mappings and prints PNG to stdout via the "show-coords -lcdTH" output. The output file is <coords-output>.png. Command line options allow for different features when producing the image. Within the code there are comment blocks which give examples of how to further customize it i.e. grouping based on name similarity, color, etc. This program is aimed at providing full customization within the limits of the Bio-Graphics module. Current version supported is Bio-Graphics-2.25 -
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An e-mail client with address book
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Advanced backup volume management system. Quick & low-cost way to make an environment more robust by backing up data in multiple places. Perl installer creates the system. The emergence of a DVTL (Distributed Virtual Tape Library). DIAP works in user spa
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TBARMapper
Finds mutations of M. tuberculosis
It maps sequencing reads with MTB reference genome (H37Rv) using NCBI blast, and finds out mutation sites. -
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13-x.org classified ad Perl script
Perl classified ad and message board
A Simple, fast and very configurable classified ad Perl program. Can be easily modified to be a message board -
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This is a Java-based project for complex event extraction from text and co-reference resolution. Currently the code can read BioNLP shared task format (http://2011.bionlp-st.org/) and i2b2 Natural Language Processing for Clinical Data shared task format (https://www.i2b2.org/NLP/DataSets/Main.php). Event extraction includes finding events and the parameters for an event in a text. The method is based on SVM but other ML algorithms can be adopted. The method details are explained in the...
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CCFE is a simple tool to quickly supply an interactive screen-oriented interface to command line scripts and commands. It also provides a menu system to hierarchically organize them and a viewer to browse their output. It provides: * A generic curses form-based interface to enter options and arguments required by scripts/commands; * A menu system to hierarchically organize them; * A viewer to browse the standard output and standard error of invoked script/command. In its...
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ZORRO is a probabilistic masking program that assigns confidence scores to each column in a multiple seqeunce alignment. These scores can then be used to account for alignment accuracy in phylogenetic inference pipelines.
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Tools for converting a Unix/Linux NIS environment to IPA (http://www.freeipa.org). Currently supports importing passwd, group, group members, hosts and netgroup NIS maps into IPA. IPA already contains support for importing automount maps.
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WoodPing
Sends an email to help determine network connectivity.
Pings a host and sends an email stating whether the ping was successful. -
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KGP is a program that reveals the KIR (Killer-cell Immunoglobulin-like Receptors (KIR)) genotypic diversity within a dataset using binary coded KIR genotypic patterns generated by the presence and absence of 16 KIR genes on a diploid chromosome.
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TPoX is an XML database benchmark based on a financial application scenario. It is used to evaluate the performance of XML database systems, focusing on XQuery, SQL/XML, XML storage, XML indexing, XML Schema support, XML updates, and other aspects.
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JmxProxyClient
JmxProxy app client
Developer tools for JmxProxy - Tomcat monitoring app.
