Search Results for "gnu/linux" - Page 56
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Showing 7986 open source projects for "gnu/linux"
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SeqWare has moved to GitHub, see https://github.com/SeqWare SeqWare is a project to create a tool set to work with next generation genome sequencers (SOLiD & Illumina). It includes a LIMS, Pipeline, and Query Engine. Check out the wiki link below to see documentation. You can get the source from the Develop link.
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PyKota Webmin Module
PyKota Webmin Module
The PyKota Webmin Module is exactly that: a module for Webmin which allows the configuration and management of the PyKota printer accounting server. -
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Debian 32bit VBox
Learn Linux sysadmin from Windows PC using this Debian Virtual Box
An Oracle Virtual Box image, packaged as an appliance to be downloaded and run anywhere. Created on 32-bit Windows XP & Oracle Virtual box 4.2.6. The VM is a Debian Squeeze 6.0.7 i386. md5sum: 85ab2066b7381af12b741a3d4dedf6c9 This file is to be specifically used along with this other great project: http://nixsrv.com/llthw There is a 64bit Debian image similar to mine in that link above. To benefit those like me who still have 32bit machines, I have created and uploaded this... -
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YaaCs - Yet Another Advanced Cati system
survey research software integrate for CATI/ CAWI/ CAMI survey
YaaCs, developed by Demetra www.opinioni.net, survey research via phone CATI (also Voip) and web CAWI and for telemarketing. Develop questionnaire for survey, create probabilistic sample, monitoring Interviewer, export survey data in statistical.. It's integrate with www.modsurvey.org. Sviluppato da Demetra www.opinioni.net per indagini CATI/ CAWI e CAMI. Vi permette di programmare dei questionari elettronici, campionamenti, monitorare gli intervistatori, esportare dati in formati... -
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QDCC (Quick and Dirty CVE Checker) is a tool for simply test if a system is affected by some CVE. It could be used on any unix systems that have perl. QDCC already handle Gentoo, Debian and CentOS and could easily handle others systems.
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Graviton is a framework which facilitates management of Linux hosts. Tools for rpm and deb packages are provided. Email reports tell you exactly what's changed or going to change on your systems. Please read the documentation for concepts and usage
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A small web application able to generate dynamic charts from data collected by our personal weather station ( like WH-1080 and others ).
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MspJI-seq_pipeline1.0
an pipeline for MspJI-digesting sequencing in DNA methylation study
MspJI-seq_pipeline1.0 is pipeline for MspJI-digesting sequencing in DNA methylation study. Modification-dependent restriction endonuclease MspJI digestion coupled with next generation sequencing could estimate the methylation state of "CNNR" Cytosine location in the genome by mapping high throughput reads to the reference sequences. MspJI-seq_pipeline1.0 is designed to be a general-purpose mapping program to handle these special characteristics of MspJI-seq. Its alignment is based on the... -
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goText is a free software for Mobile Phones to send free SMS messages over GPRS/EDGE/UMTS/WiFi connection. It is coded in Java (J2ME) with MIDP 1.0 and CLDC 1.0 profiles, so it can be used an almost any java enabled mobile phone/device!
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MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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PerlORM - Object relational mapper (ORM) for Perl. PerlORM is Perl library that implements object-relational mapping. Its features are much similar to those of Java's Hibernate library, but interface is much different and easier to use.
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AfterGlow is a scripts which facilitates the process of generating link graphs from CSV input. AfterGlow is written in Perl and generates output that can be read by GraphViz, Gephi, etc. Source: https://github.com/zrlram/afterglow Tarball: http://pixlcloud.com/afterglow-2
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EasyWall
Easy to use firewall for linux beginners.
New improved iptables tool, based on my earlier project Easy Linux Firewall, but rewritten from scratch using Perl. It's a simple rewrite for now, but i am working on adding some new features like. Some of the improvements will be web administration panel, automatic filtering daemon, TCP listener providing easy to use API so you can integrate it on many servers and centralize them in to one Web interface to control all of them. -
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GenOO-HTS
A Modern Perl Framework for High Throughput Sequencing analysis
GenOO-HTS [jee-noo] is an open-source; object-oriented Perl framework specifically developed for the design of High Throughput Sequencing (HTS) analysis tools. The primary aim of GenOO-HTS is to make simple HTS analyses easy and complicated analyses possible. GenOO-HTS models biological entities into Perl objects and provides relevant attributes and methods that allow for the manipulation of high throughput sequencing data. Using GenOO-HTS as a core development module reduces the overhead... -
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Fetches your Hotmail Live mail such that it can be stored in a local mailbox or further processed via procmail-like mail filters.
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env2
Convert environment variables between scripting languages
A unix perl script to convert environment variables between scripting languages. For example, convert csh setup script to bash or the other way around. Supports bash, csh, ksh, modulecmd, perl, plist, sh, tclsh, tcsh, vim, yaml, and zsh. Complements http://modules.sourceforge.net/ -
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WebAPP is a community portal and content management system written in Perl. Included are features such as forums, links directory, downloads directory, articles, gallery, handheld format, xml feed, profiles, instant messaging, and more all the time.
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NRK opptak
Download video and audio from NRK.
Script to download video and audio from tv.nrk.no, radio.nrk.no, nrk.no/skole and www.nrk.no. See wiki for more info. -
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An iptables front-end to allow rules to be expressed in a more flexible, free-form style using language closer to plain-English than iptables commands. Rules are then compiled to normal iptables commands.
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A Perl-based benchmarking and load testing suite, with backend written in C. Based on apachebench, but extended with much more functionality. Currently released on CPAN as HTTPD::Bench::ApacheBench.
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HPeak
A HMM-based algorithm for defining enriched regions from ChIP-seq data
HPeak is a hidden Markov model-based approach that can accurately pinpoint regions to where significantly more sequence reads map. Testing on real data shows that these regions are indeed highly enriched by the right protein binding sites. Command (single-end): perl /compbio/software/HPeak3/HPeak.pl -sp HUMAN/MOUSE -format BED -t TREATMENT.inp -c CONTROL.inp -n OUTPUTPREFIX -fmin 100 -fmax 300 -r 36 -ann -wig -seq -interfiles Command (pair-end): perl /compbio/software/HPeak3/HPeak.pl... -
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mobcalPARSER
A cross-platform interface for the *.mfj file format.
mobcalPARSER is a command line based PERL frontend/interface for MOBCAL with limited wrapper functionality. "MOBCAL - A Program to Calculate Mobilities" is available from Professor Martin F. Jarrold's webpage http://www.indiana.edu/~nano/software.html. -
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AHT (Ashiyane Hack Tools Ver) 1.1
Perl Hacking Tools (BackTrack)
...It is For BackTrack This Script Contains This tools : Local File Disclource (LFD) Checker Scanning the whole netmask and returning IP and MAC BackConnect Tools Proxy Checker Reverse IP Add a User With Admin Access (Windows) Add a User With r00t Access (Unix) Grab Cpanel Users Remote Port Scanning With NetCat SQL Injection Scanner MD5 Hash Cracker (Online) Admin Page Finder Make Uploader With Echo Method (Linux Servers) Service Scanning BruteForce Services With Medusa And Hydra (Backtrack) Test Lfi With php:// Bypass Method Cms Analyzer (Beta Version) Server Scanning With Nmap Remote Command Execution Console Fck Editor Scanner -
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Various tools for creating annotated parallel corpora including pre-trained tagging and parsing models for various languages, sentence alignment tools and word alignment tools. Uplug also includes a web-based interface for interactive sentence and word alignment and scripts for indexing and querying parallel corpora using the Corpus Work Bench CWB. Download 'uplug-main' first and then add other packages.
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ProServer is a very lightweight DAS server written in Perl. It is simple to install and configure and has existing adaptors for a wide variety of data sources. It is also easily extensible allowing adaptors to be written for other data sources.
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vzprocps-perl
Process list tools for OpenVZ containers
vzprocps-perl tools are usual ps and top utilities (named vztop and vzps to not conflict with the standard ones) with an -E option added. You can use -E CTID option to limit the output to the selected CTID (use 0 for the host system).
