Search Results for "data structures c" - Page 4
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Showing 263 open source projects for "data structures c"
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wEMBOSS is a Web interface for the EMBOSS software package for biological sequence analysis. Under wEMBOSS each user has a private workspace (UNIX home directory) on the server, where he can permanently store his data and organize them in projects. The companion suite wrappers4EMBOSS allows to integrate under EMBOSS a number of popular bioinformatic software suites as BLAST, CLUSTAL and MRS.
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ieid
program for adaptive code rating
The Program creates an Folder with Data for Auto rating of encoding descriptors. For this purpose codes with know encoding labels are analyzed. Code with unknown labels is statistically analyzed to recover the missing encoding. The Software is able to analyze mime type encoded e-mail. An example database for message encoding detection is provided. -
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eubirdb is a bird(watchers) DB for name translation (scientific,it,en,fr,de,sp,nl) and retrieval, wants to be a base for birdwatchers (and ornithologists) software&data (checklist,img,...). Currently for EU(ring) aims to worldwideness. See forums for mor
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bnns
Research tool for interactive training of artificial neural networks.
BNNS is a research tool for interactive training of artificial neural networks based on the Response Function Plots visualization method. It enables users to simulate, visualize and interact in the learning process of a Multi-Layer Perceptron on tasks which have a 2D character. Tasks like the famous two-spirals task or classification of satellite image data. -
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WMI Lab
Explorer WMI classes, execute queries and generate scripts.
WMI Lab is a lightweight, open source application based on the .Net Framework 3.5 that expands on functions offered in common WMI tools to allow for the inspection, querying, deeper interrogation and code generation of WMI classes on local or remote Windows systems. -
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PlaTypUS
Plasmodium Typing Utility Software
The goal of PlaTypUS is to establish a unified Plasmodium whole genome analysis tool, that aligns short read sequences in an agreed upon manner, with many quality control steps, and calls both SNVs and CNVs in a community agreed standard way. We also seek to provide this analysis in a stand-alone graphic user interface so that labs around the world can analyze their own whole genome sequencing data, rather than relying on outside institutes. -
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allink
Software for data analysis, image processing, simulations, solver.
...Matematica) performs math operations on vectors and matrices for smoothing, interpolation, convolution, image processing... VarData) manipulate a structure of points connected by links. Addraw) openGL engine. ElPoly) analyze mechanical properties of polymer and membrane like structures. Addyn) perform molecular dynamics and Monte Carlo simulations and has a solver for 4th oder PDE. Avvis) perform all the operation of Matematica on different sets of data visualized on a Qt graphical interface. DrImage) image manipulation on the Matematica filters. The program is intended to use as less as possible external libs (optional: openGL, gsl, fftw, cgal, png, tiff, boost, MPI, Qt...). -
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DEEEP
Detector of Integer Vulnerabilities in Software Portability
DEEEP is a open source static analysis tool to detect, in C programs, integer vulnerabilities caused by the bad adaption of aplications from ILP32 to LP64. It uses the tools Lint and Splint, and runs over Open Solaris and Linux operating systems. This tool semantically analyses source code. More precisely, it does type checking, data-flow analysis, and it automatically correlates the results of these two types of analysis. -
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Fast Artificial Neural Network Library is a free open source neural network library, which implements multilayer artificial neural networks in C with support for both fully connected and sparsely connected networks. Cross-platform execution in both fixed and floating point are supported. It includes a framework for easy handling of training data sets. It is easy to use, versatile, well documented, and fast. Bindings to more than 15 programming languages are available. An easy to read introduction article and a reference manual accompanies the library with examples and recommendations on how to use the library. ...
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Statistics modules in Perl Data Language, with a quick-start guide for non-PDL people. They make the PDL shell work like R, but with PDL threading (fast automatic iteration) of procedures including t-test, linear regression, and k-means clustering.
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Opsview is an enterprise grade network, server and application monitoring tool. Features include Nagios® Core compatibility, distributed monitoring, flexible status views, data warehouse and reporting. Software available from: http://opsview.com/downloads
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Audited Objects (AO) is a tool for the analysis and optimization of automated software processes such as builds. It supports reuse of previously built objects, generation of prerequisite data, parallelization, etc.
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ParaSim
Parallelized calculation of molecular similarities
Diversity assessments and comparisons of large compound databases require calculating similarities of millions of compounds in an affordable time. ParaSim addresses this challenge by parallelizing the calculations according to the number of computing cores available on a single machine. It is optimized for the throughput of very large numbers of query structures against very large numbers of reference structures. As as special feature, ParaSim allows to store and and to access frequently... -
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hrefinder
Detection of homologous recombination events from SNP data
This software detects homologous recombination events (HREs) from SNP data. Based on SNP alleles calls and locations, it breaks the genomes into locally colinear blocks, and looks for cases where SNPs do not agree with the vertical pattern of inheritance in a phylogeny. It applies a dynamic programming algorithm to model whether changes within a block are likely a result of mutations, sequencing errors, or HRE. We use information from the nearby SNPs, so that if 1-2 alleles in a series of... -
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FleXML reads a DTD describing the format of XML documents; it may be specified as a URI to the DTD on the web. From this FleXML produces a validating XML processor with an interface to support XML applications.
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Open-source weather database system for storage of weather/water observations, forecasts, analysis fields, and hindcasts. includes loading program for GRIB files. Visit project website (http://wdb.met.no) for further information. Please note: this project has now moved to http://wdb.met.no
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HPeak
A HMM-based algorithm for defining enriched regions from ChIP-seq data
HPeak is a hidden Markov model-based approach that can accurately pinpoint regions to where significantly more sequence reads map. Testing on real data shows that these regions are indeed highly enriched by the right protein binding sites. Command (single-end): perl /compbio/software/HPeak3/HPeak.pl -sp HUMAN/MOUSE -format BED -t TREATMENT.inp -c CONTROL.inp -n OUTPUTPREFIX -fmin 100 -fmax 300 -r 36 -ann -wig -seq -interfiles Command (pair-end): perl /compbio/software/HPeak3/HPeak.pl -sp HUMAN/MOUSE -format BED -pe TREATMENT.inp -c CONTROL.inp -n OUTPUTPREFIX -isize 200 -r 100 -pec (if control is PE) -ann -wig -seq –interfiles note: 1. ... -
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bind-dlz-tools
BIND9 Perl Plugin
Development has moved: https://github.com/jeagle/bind-dlz-perl BIND 9 dynamically loadable zone (DLZ) plugin embedding a Perl interpreter in BIND, allowing Perl scripts to be written to integrate with BIND and serve DNS data. Current version supports BIND 9 dlopen interface and BIND 9.9 clientinfo extensions. -
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OGDL is a structured format for representing graphs of information, alternative to XML. Its grammar is very simple allowing for compact parsers. The text version is easily readable; the binary version is used for storage and interprocess communication.
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SOAPstreaming
Hadoop-based Framework for Analyzing Large Scale NGS Data
SOAPstreaming, a flexible hadoop-based framework for systematically analyzing large scale NGS data. SOAPstreaming uses an enhanced Hadoop streaming strategy of MapReduce model to parallelize tools, which offers great scalability and efficiently reduces running time of large NGS datasets. Moreover, it has nice expansion capability to integrate new tools for different analysis needs, which more and more tools will be added in this framework. -
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SOAPsv
SOAPsv: is a program for detecting the structural variation
This is an approach that complements previous methods for reliable homozygous structural variation identification. Our approach accurately determines genotype and breakpoints relative to a reference genome based on de novo assembly of Illumina Genome Analyzer sequencing data. In this method, we examined only homozygous structural variations because detecting heterozygous structural variations requires assembly of haplotype sequences, which is not yet possible using existing assemblers. -
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Es un Codificador/Decodificador de hexadecimal a Ascii y de Ascii a hexadecimal , escrito en C++ y ejecutado desde un terminal.
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A software toolkit for using the EPCglobal Low Level Reader Protocol (LLRP) to communicate with conforming RFID readers.
