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brn is a Perl-based command-line tool designed to ease the task of bulk renaming a large number of files. Started as a fork of the standard perl 'rename' tool, this project has since mutated significantly and is still undergoing rapid flux.
A set of commandline tools to extract, manipulate, and present multidimensional data. These tools are targeted specifically at summarizing results of simulation experiments.
This is the high throughput PCR primer design software that is used at the J. Craig Venter Institute. See: Li K, et al. "Novel computational methods for increasing PCR primer design effectiveness in directed sequencing". BMC Bioinformatics 2008, 9:191.
This script takes the Western Australian linked health data provided by the Data Linkage Unit and converts it to a TAB delimited format that is easier to import into SPSS or Excel etc. Mileage may vary.
Love the commandline? Tired of using web browsers to view meanings of words? edict is the word you were looking for!! edict provides you tools to view word meanings and more from commandline. Give it a shot and see how convenient it is.
Pieman is a command-line tool for managing personal information such as appointments, contacts, and tasks as well as other data such as notes and rc files. It is a portable pure-perl tool inspired by abook, devtodo, mutt, and pal, among others.
OpenJCS (Job Control System) is a batch scheduling and control system for use on Unix systems which uses load balancing, dependency control, scheduling, runbooks, queueing and resource allocation subsystems for unmatched scalability and flexibility.
Quick and dirty perl interface for website http://www.fakenamegenerator.com/. Supports all nations, all countries and both genders. Allows use of privoxy/tor for improved anonymity.
"cry"pted "st"orage - "e"ncrypted "m"edia 'Commandline application written in perl to provide encrypted diskspace on mobile storage devices and allow management of such encrypted storage.
WWW::Myspace is a set of Perl modules and scripts that allow automated interaction with your Myspace.com account. The documentation includes many example scripts, and the distribution installs several scripts "out of the box".
(Do-It) Task manager to organize and keep to-do lists manageable via the commandline. Light weight and easy to use. This software uses SQLite for the back-end db so no db maintenance is required.
FusionMiner is a molecular biology program which accepts genomic alignments in BLAST/BLAT tabular output and attempts to find true fusion transcripts. A single command runs the pipeline and generates results.
A system for testing open source applications. Allows uploading or scheduling retrieval of software
and its dependencies, and running different kinds of tests on it.
NaYaBoh is an „Internet Proxy and Gateway“, especially designed to enhance Internet access in developing countries. NaYaBoh tries to be as simple as possible to use. Speed up your Internet, save bandwidth: web/dns caching, advertisement blocking.
This is a small set of perl scripts targetted to the deployment of a list of files to one or more target hosts via sftp. and piloting the deployment of crontab entries to a distant host via scp/ssh.
Rdbackup is a small and easy to use backup system based on rsync and ssh. It works with a disk-to-disk backuping strategy where the data are stored on a single backup server. Rdbackup also provides a status monitoring through the SNMP interface.
HOPPscore is a simple application for evaluating the structural quality of theoretical or experimental protein structures. Protein are evaluated by comparing structure fragments to a reference dictionary of fragments from high resolution structures.
Redland is a set of object-based, modular and portable C RDF libraries providing RDF APIs for the graph, triple storage (librdf), RDF/XML parsing and serializing (Raptor), SPARQL RDF querying (Rasqal). Language APIs in Perl, PHP, Python, Ruby and others.
YATT.pm (or YATT) is Yet Another Template Toolkit for Perl. Like PHP (and unlike HTML::Template), YATT.pm converts each template into (executable) Perl package(class) so that you can define subs to build up your own abstraction architecture.
Peakplot is a Perl implemented freely available software application which labels peptide tandem mass spectra retrospectively after a Mascot database search.
Availability: http://fgcz-peakplot.uzh.ch/