Showing 72 open source projects for "next"

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  • 1

    EXCAVATOR-tool

    Tool for detecting CNVs from whole-exome sequencing data

    ATTENTION!!!!!ATTENTION!!!!!ATTENTION!!!!!ATTENTION!!!!! We recently published on BMC Genomics a novel software package, named XCAVATOR, for the identification of CNVs/CNAs from short and long reads whole-genome sequencing experiments (https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-017-4137-0). XCAVATOR is freely available at http://sourceforge.net/projects/xcavator/. EXCAVATOR is a novel software package for the detection of copy number variants (CNVs) from whole-exome...
    Downloads: 2 This Week
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  • 2

    ALSA MIDI Filter (AMF)

    A MIDI filter that uses the ALSA MIDI libraries

    The ALSA MIDI filter application runs as an ALSA MIDI client that can receive input from a source (such as a sound card hooked up to a MIDI keyboard), perform various filtering and other functionality based on the type and content of the MIDI input, and send the result to one or more other MIDI clients.
    Downloads: 1 This Week
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  • 3

    Pop-seq

    Population simulator to solve next generation sequencing questions

    Pop-seq is a perl based simulation tool, for generating any kind of mapping population using an user defined recombination landscapes. Combined with the Seq-sim tool you can generate pooled or bar-coded next generation sequencing biased outcomes. This tool were used to solve reappearing question in a experimental design (e. g. of how many plants or sequencing depth is advisable in a back crossed or out crossed scenario )
    Downloads: 0 This Week
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  • 4

    MspJI-seq_pipeline1.0

    an pipeline for MspJI-digesting sequencing in DNA methylation study

    MspJI-seq_pipeline1.0 is pipeline for MspJI-digesting sequencing in DNA methylation study. Modification-dependent restriction endonuclease MspJI digestion coupled with next generation sequencing could estimate the methylation state of "CNNR" Cytosine location in the genome by mapping high throughput reads to the reference sequences. MspJI-seq_pipeline1.0 is designed to be a general-purpose mapping program to handle these special characteristics of MspJI-seq. Its alignment is based on the open...
    Downloads: 0 This Week
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  • 5
    TANGO is one of the most accurate tools for the taxonomic assignment of Next Generation Sequencing reads using multiple reference taxonomy
    Downloads: 0 This Week
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  • 6
    T-lex

    T-lex

    Transposable Element annotation using Next-Generation Sequencing data

    The T-lex package contains two pipelines. The T-lex pipeline calls presence/absence of known TE insertions using re-sequencing data. On top of the genotyping, this pipeline also allows to re-annotate TEs and discover traces of transposition events called Target Site Duplication (TSD). The other T-lex pipeline discovers and annotates de novo TE insertions. http://petrov.stanford.edu/cgi-bin/Tlex.html
    Downloads: 0 This Week
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  • 7
    SeqWare has moved to GitHub, see https://github.com/SeqWare SeqWare is a project to create a tool set to work with next generation genome sequencers (SOLiD & Illumina). It includes a LIMS, Pipeline, and Query Engine. Check out the wiki link below to see documentation. You can get the source from the Develop link.
    Downloads: 0 This Week
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  • 8

    TaxoAssignement

    Taxonomic assignement of sequences

    TANGO is one of the most accurate tools for the taxonomic assignment of Next Generation Sequencing reads using multiple reference taxonomy
    Downloads: 0 This Week
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  • 9
    BreakDancer-0.0.1 is a Perl package that provides genome-wide detection of structural variants from next generation paired-end sequencing reads.
    Downloads: 0 This Week
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  • 10

    srvRX live

    A simple project for creating hosting server-a-like live distribution

    The idea is creating a simple and easy to install debian based secure system distibuted in LAMP stack as well and LNMP (nginx), with support for 32-64 bit cpus and small-large ram. Initial Stage: Creating stable live systems Second Stage: mod_mono and php coexistance, RoR, manage users/groups/packages scripts and system monitoring system, custom graphics Third Stage BUilding entire CnCP system (CnCp's not cPanel in old UNIX fashion), a web interface to create/manage and deploy...
    Downloads: 0 This Week
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  • 11

    HPCall

    Improved base-calling for homopolymer-sensitive next-gen data.

    The current software contains the implementation for the 454 pyrosequencing platform.
    Downloads: 0 This Week
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  • 12
    The Perl script reads cron entries from STDIN and resolves them to the time base, starting with the present day up to the end of next month. Use sort to get all cronjobs together. Example: "crontab -l | resolvecron | grep -v "minutely" | sort | less
    Downloads: 0 This Week
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  • 13
    ASSD is a simple biological sample database focused on the storage of proteomics data. It tracks every processing step incl. results throughout a sample's lifetime. Next to proteomics data it can also store other results like FACS or Western Blots.
    Downloads: 0 This Week
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  • 14
    BIGpre: a quality assessment package for next-genomics sequencing data
    Downloads: 0 This Week
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  • 15
    Perl code scafflod for the automatic execution of main Next Generation Sequencing data processing and analysis.
    Downloads: 0 This Week
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  • 16
    grub2rand is a perl script designed to change the grub2 picture randomly. Choose a folder with your pictures in it and every time you log into your computer, grub2rand will choose a new picture for the next startup.
    Downloads: 0 This Week
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  • 17
    This is a utility to convert a set of fasta formatted sequences along with output from ELAND or SOAP (and other next generation sequence alignment in due time) to make them viewable using eagleview.
    Downloads: 0 This Week
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  • 18
    EventCentral collects each night in a central repository Microsoft Windows' event logs from the network neighbourhood. They can be checked the next morning via a web page.
    Downloads: 0 This Week
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  • 19
    Enterprise PostgreSQL Query log Analyzer (epqa), it parses huge postgres log files, and shows html report. This report will be very useful for doing database optimization, and in fine tuning the psql queries. It parses compressed files also.
    Downloads: 0 This Week
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  • 20
    A virtual software pipeline that contains several PERL modules for processing next generation sequencing data
    Downloads: 0 This Week
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  • 21
    Zimbra is an open source server and client technology for next-generation enterprise messaging and collaboration. Please see www.zimbra.com for the latest news and downloads.
    Downloads: 1 This Week
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  • 22
    Netbootmgr provides a GUI and CLI for managing the next boot action for network booted nodes of a cluster. The GUI includes node status information and provides an interface to cluster node power control.
    Downloads: 0 This Week
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  • 23
    Authpfng is a new authentication back-end to allow people to sign in to the network administrated by an OpenBSD pf-firewall. Login can be done by ssh, web-based and smb. You can assign traffic quotas and QoS per-user or after a certain bandwidth usage.
    Downloads: 0 This Week
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  • 24
    A SMTP to ESMTP proxy that accepts mail, parses it for template variables. The template variables are rendered with values from a CSV file. Next they are sent to the ESMTP server. Uses Template::Toolkit, Config::Simple alongwith other libraries.
    Downloads: 0 This Week
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  • 25
    `Talk-To-Me` or `TTM` is the next-gen messenger with Catchy Look, Nice Alerts & Sounds, Funny Status messages and more !
    Downloads: 0 This Week
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