Search Results for "linux programs" - Page 2
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Showing 162 open source projects for "linux programs"
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CuiTools (Coo-e Tools) is a freely available package of Perl programs for unsupervised and supervised word sense disambiguation experiments. The name CuiTools comes from the Concept Unique Identifiers (CUIs) found in the Unified Medical Language System.
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fourSig
Analyze 4C-seq data.
fourSig is a suite of programs for analyzing and visualizing 4C-seq data. -
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Are Wide Binaries Optical
A series of programs that search for binaries in large star catalogs.
A series of programs that search for binaries in the UCAC4, URAT1 and Tycho star catalogs -
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MITP
MITP - conserve & novel miRNA identification & target prediction tool
miRNA is a widely known small non-coding RNA which can mediate gene regulation of most important biological processes in plants and animals. Therefore, identification conserve and novel miRNA and their target genes in model and new sequenced species are inevitable. MITP is designed to identify miRNA easily and faster based on sequence mapping result from any mapping software which producing SAM format output result, blast result (default output result) or blat result (default output result).... -
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This is a frontend to ffmpeg and standard VCD/DVD ripping creation programs written in perl-gtk2. It is designed to enable (as seperate processes) ;VCD/DVD ripping;Any Media-transcoding that ffmpeg supports ;DVD creation
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A perlscript to build source code into programs, like make in purpose but without makefiles. Dynamically finds the dependencies at build time. Build in support for cross-platform programs, multi threaded compiling and distcc.
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SenseClusters is a suite of Perl programs that clusters similar written contexts using unsupervised methods. It supports its own native methods and Latent Semantic Analysis. It takes users from preprocessing of text to clustered output.
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The Ngram Statistics Package (ngram) is a suite of Perl programs that identifies significant multi word units (collocations) in written text using many different tests of association. NSP/ngram allows a user to add their own tests with minimal effort
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HTTPSearch
Simple Perl Script to search for sensitive Web sites
A perl script that uses three Linux programs (nmap, grep, and wget) to find, retrieve, and classify web sites that may be running on a network. -
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The Protein Similarity Network
Human protein similarity network used to predict drug safety.
This is the protein similarity network - PSIN. Here, the nodes are human proteins and they are linked only if they share considerable sequence similarity. We found that this network is particularly useful to distinguish approved from problematic drug-targets. Here you also find the complete set of programs and datasets we used for this purpose. Free to help further test and develop this project. Your help and expertise are much appreciated ! If you have any questions, please do... -
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vcfhacks
simple to use commandline programs for VCF filtering and manipulation
PLEASE NOTE: THIS PROJECT PAGE WILL NO LONGER BE UPDATED - PLEASE USE THE GITHUB PAGE (https://github.com/gantzgraf/vcfhacks) TO FIND THE LATEST RELEASE (https://github.com/gantzgraf/vcfhacks/releases/latest). (relatively) Simple to use commandline tools for the manipulation and analysis of VCF files, geared towards the identification of pathogenic mutations in Mendelian disease. -
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The Khepera III Toolbox is a collection of scripts, programs and code modules for the Khepera III robot. It allows for easy access to all sensors and actuators of the robot and provides a lot of standard programs.
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regutils
regutils - Win9x registry tools in Unix C & INI file tools in Perl
Regutils is a collection of programs to help in managing the configuration of Windows software and systems. The utilities can be used to apply user and machine specific customizations on the fly as users log in or as machines are booted. They can also be used to identify and correct similarities and differences between software configurations. These may be helpful in debug situations or when consistency or differences need to be maintained. The regutils package was initially created... -
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Site Tools
A collection of tools to facilitate the management of websites
The sitetools project is a collection of tools to facilitate the management of websites. It includes individual programs that perform separate tasks to help make a web masters daily routine easier to manage and less error prone. -
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DEEEP
Detector of Integer Vulnerabilities in Software Portability
DEEEP is a open source static analysis tool to detect, in C programs, integer vulnerabilities caused by the bad adaption of aplications from ILP32 to LP64. It uses the tools Lint and Splint, and runs over Open Solaris and Linux operating systems. This tool semantically analyses source code. More precisely, it does type checking, data-flow analysis, and it automatically correlates the results of these two types of analysis. -
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gitslave
Coordinated multi-repository super-projects for Git
Gitslave is a script for coordinated version control of large projects combining code from multiple independent repositories using Git. More flexible than traditional git submodules, gitslave provides a simple wrapper around command-line git that manages a directory tree with multiple subsidiary ("slave") git repositories in sub-directories of a "master" git repository. Any git command run from the "gits" wrapper will be performed in all the git repositories; for example gits checkout -b... -
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buck-security
Collection of security checks for Linux
Buck-Security is a security scanner for Debian and Ubuntu Linux. It runs a couple of important checks and helps you to harden your Linux system. This enables you to quickly overview the security status of your Linux system. As a system administrator you often get into situations where you have to take care of a server, that has been maintained by other people before. In this situation it is useful to get an idea of the security status of the system immediately. Buck Security was designed... -
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A Perl module and selection of scripts to aid processing of NEXUS-based tree files ready for supertree construction in programs like PAUP*.
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Zombie Eradication Squad
a process management suite
Zombie Eradication Squad is a suite of process management programs designed to ease the burden of dealing with zombie, that is defunct, processes. -
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TrackNode
SNMP-Based Network Node Polling Suite
TrackNode is designed to become a robust, extensible architecture for polling arbitrary system metrics over SNMP. This project is still in early experimental phases, so functionality is limited (the current code is more of a PoC than anything else). No warranties are provided for the functionality of this code. The licensing agreement for this code may be found at http://creativecommons.org/licenses/by-nc-sa/3.0/. All rights not expressly conveyed within the license agreement are... -
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DAWGPAWS is a suite of command line programs written in Perl that accelerates annotation of genes and transposable elements in plant genomes by automating the process of running annotation programs and facilitating combined evidence annotation curation.
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ReferenceFree
Scripts for reference free genomic analysis
These are Python scripts plus C/C++ programs for automating the reference free genomic analysis described in: Kua C-S, Ruan J, Harting J, Ye C-X, Helmus MR, et al. (2012) Reference-Free Comparative Genomics of 174 Chloroplasts. PLoS One 7(11). http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0048995 Analytical concept conceived by CHCannon and CSKua. Original script written in Mathematica by CHCannon. -
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A portal project to produce a web based front end to a compute resource, such as a cluster, using PHP, mysql, apache and perl. The intent is to allow non-programmers to use complex programs through an intuitive web interface.
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Koha-tools is a set of programs that work with the Koha ILS but are not part of the Koha distribution. Koha-tools contains programs written in perl and php.
