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Infodomestic Objects - This is a set of distribution software that mutate the environment providing and advanced interaction experience. We will use a mixed POSIX/Linux/BSD based platform to develop and distribute our interaction experience improvement.
IDEA (Interactive Display for Evolutionary Analyses) augments PAML with a graphical interface, phylogeny reconstruction using PhyML or PHYLIP, convenient and efficient parallel processing and visualizations.
/etc/groups is a prefuse application that enables the visualisation of a database of groups and organisations and the way they are related together. It enables filter on data and a graphical search engine. It uses GraphML for the data input.
DAGchainer identifies chains of gene pairs sharing conserved order between genomic regions, by identifying paths through a directed acyclic graph (DAG).
A bunch of tools for various purposes - lyrics presentation on a digital projector, CD copying organisation, an AJAX-based address book, Joomla! add-ons, software for monitoring incoming calls using FLI4L and AVM's Fritz!Box. Just something for everyone!
The files on SourceForge are a bit aged, you can get an up-to-date overview at https://zephyrsoft.org or https://github.com/mathisdt
RanBunHyou is a Q&D generator of BINGO-like word games and other randomized teaching materials from plain text files. Entertains children studying vocabulary, etc. For Java 2+ (jre1.4+) and Macintosh System 7 to 9, being re-written in perl/CGI.
Tpl makes it easy to serialize your C data using just a handful of API functions. The data is stored in its native binary form for maximum efficiency. C, Perl and XML supported. Data is portable across CPU types and OS's from Unix to Mac to Windows.
cBSC - collaborative balanced scorecard is a collaborative tool to support the strategic development of company or public balanced scorecards. Example: All employees of a business unit can develop together a balanced scorecard.
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DNA sequencing quality values, base calling and trace processing
Tracetuner is a tool for base and quality calling of trace files from DNA sequencing instruments. Originally developed by Paracel, a Celera Business, this code base was released as open source in 2006. TraceTuner was used by Celera to call 30+ million reads from both Drosophila and human genome sequencing projects. In 2000, Applied Biosystems bundled TraceTuner with ABI3700 Genome Analyzers and shipped it to the customers of these capillary electrophoresis sequencers. Later versions of...
Open Live Support aims at providing a free platform independent chat support system. The system currently works as a live chat support system. The team is currently working on integrating remote control capabilities to the system.
Java Slideshow is a platform independent image viewer especially for huge collections. It provides an easy command line interface, supports tagging and view by category, zoom, move and has some file manager functions like delete file or find duplicates.
Image Tagger is a simple graphical application to allow the tagging of images. It currently allows you to set title, commands, and keywords in the IPTC / EXIF tags. It's not very polished, but it is pretty stable. It uses ExifTool for editing tags.
@Note2 is now available in www.anote-project.org
@Note is a Biomedical Text Mining workbench that integrates current Biomedical Text Mining (BioTM) methods and provides biologists with intuitive tools capable of supporting their bibliographic searches and further literature curation.
MyJQuery is an operating system independent database utility written entirely in Java, for beginners MySQL 5.1+ Database & students.
Generating Perl,Perl/CGI,PHP,Java,JSP Code Snippet & export CSV,HTML,XML
execute any MySQL statement
SquidRestrict is a Web based tool that allows multiple time restrictions to be placed on internet usage for firewalls that use the Squid Web Cache (http://www.squid-cache.org/).
BioStream enables bioinformatics researchers to create, query and apply tools to their own databases. It supports sequence files and other data types by allowing the creation of metadata definition files.
hypKNOWsys aims at developing a Java-based workbench for knowledge discovery and knowledge management. Currently, hypKNOWsys has released two intermediate tools: DIAsDEM Workbench (text mining for semantic tagging) and WUMprep (Web mining pre-processing)
A Perl program to write characters (eg. a lot number) to an alphanumeric display via rs232. Includes JavaSwing GUI. Developed for production in pharma industry. Currently two lines included. German version.
The Genomic Diversity and Phenotype Data Model (GDPDM) captures molecular and phenotypic diversity data. MySQL databases are used to implement the schema. This project develops software tools (written in Java, Perl, etc.) associated with this model.