Search Results for "commons-beanutils-1.7.0.jar" - Page 2
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Showing 66 open source projects for "commons-beanutils-1.7.0.jar"
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The Protein Similarity Network
Human protein similarity network used to predict drug safety.
This is the protein similarity network - PSIN. Here, the nodes are human proteins and they are linked only if they share considerable sequence similarity. We found that this network is particularly useful to distinguish approved from problematic drug-targets. Here you also find the complete set of programs and datasets we used for this purpose. Free to help further test and develop this project. Your help and expertise are much appreciated ! If you have any questions, please do... -
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vEMan - VMware ESX/ESXi Manager
An unofficial VMware® ESX/ESXi Manager for Linux
vEMan - [v]Mware [E]SX [Man]ager provides a GUI for managing ESX servers natively from within your Linux desktop without the need to use Windows vSphere® anymore! Support vEMan development for v2.0 by gofundme! http://www.gofundme.com/vEMan Why I started vEMan? Because I hate it to start my Windows VM to manage ESX(i) servers ;o) vEMan is (maybe) not needed if you use vCenter 5.x: http://kb.vmware.com/kb/2005377 --> vSphere >= v5 has a "web client" BUT keep in mind that there are... -
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Transcriptome assembly ORA
Reference-based transcriptome reconstruction software
Sofware for reference-based transcriptome reconstruction. It performs reconstruction starting from short reads obtained from RNA-seq. It is best suited to manage the transcriptomes of lower eukaryotes with a low number of introns per gene and it can be used also for procariotes. It needs a SAM file with the reads aligned on the reference genome and (optional) a gff file with the position of genes on the reference genome. It provides in output the positions of the transcripts identified,... -
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BatchFusionPrimer
now hosted here: https://github.com/dohalloran
now hosted here: https://github.com/dohalloran -
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TE-locate
a tool for calling transposons
TE-locate is a tool to locate all copies of sequences in a reference sequence using read-pairs. TE = Transposable Element Input is NGS-data. Please download all files first (including the demo data) and make your first run then. -
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openSEQ
NGS compute distro proloaded with pipeline analysis software
Forked Ubuntu 14.04 minimal install with XOrg and FluxBox desktop environment for web-based pipeline construction and job submission. HOWTO: 1) Set VM network settings to a bridged adapter type. 2) Load VM to client 3) From host: $ ssh -X ubuntu@<foobar> 'firefox && butterfly.server.py --unsecure' --- passwd = 616287xx 5) or ssh into host with X forwarding, and type runme This will launch an X-session of Firefox on the client, which will then be forwarded to the host. The... -
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Just_Annotate_My_Genome
Comprehensively annotate your non-model species genome.
Uses an existing exonerate output or just predicted proteins (e.g. from Transdecoder or just a FASTA file) to prepare gene prediction inputs for Augustus, SNAP and geneid. Exonerate is run (enabled via AAT) if it is not provided. GTF file is produced to judge quality of annotation. Sorts out high quality alignments from those that don't meet the criteria. -
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Bacterial Makeup Explorer
Bacterial Make eXplorer analyses bacterial genome ortholog maps
BMX (Bacterial Makeup eXplorer) computes the core genome size and composition from orthologous maps. -
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decompression cat [filename].tar* | tar xvf(z) – ex) cat [CLOCHe].tar* | tar xvf –
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Wap Auto Index Advance
Auto Index wap is Advance of Download Portal (Multi Language)
Djamolwap 13v -Advance Auto Index With Web Admin Panel + Multi Language + Themes ||||||||||||||||||||||||||||||||||||| New Updates ||||||||||||||||||||||||||||||||||||| - Multi Language Website 1) English 2) Urdu 3) Gujrati 4) Russian - User/Visitor manual change language website - Multi Language Plugin On/Off - Added Function in Admin Panel - Automatic All Mp3 Tag Setting Added _____________________________________________ Official Website : http://ai.djamol.com Demo... -
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modDFS
Find whether a KEGG module is complete in a proteome
Given module definitions and reaction information based on a KEGG database, modDFS does a depth first search to find whether a set of KOs are sufficient for completion of a module. For cases where only 1 absent KO would've been enough for module completion, that module is reported to be complete(only lenient). For cyclic modules, completion is defined as having all the module reaction steps present. Again, lenient completion cases are reported. Also, all absent reactions are reported so that... -
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Redhat Linux Oracle OVM Systems Monitor
Redhat Linux OVM System Performance Monitoring
It's a very light Redhat Linux and Oracle OVM System Performance Monitoring tool written in Perl using rrdtool for Database and Graphing. Allows you to query the RRD database given a set of dates and generates a web based graphs. Easy to install. Uses less disk space than most performance monitoring tool. Data of each host monitored is kept for 2 years and occupy less that 25 MB of disk space. -
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Automatic Compound Processing (AuCoPro)
Automatic compound splitting and semantic analysis of compounds
The central problem to be addressed in this project concerns a multidisciplinary (linguistics and computational linguistics) investigation into sharing of knowledge and resources between closely-related languages, specifically relating to the automatic processing of compounds. Specifically, we will explore the possibility to create new knowledge about closely-related languages, and efficiently develop additional, more advanced resources for (a) compound segmentation; and (b) the semantic... -
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SSH Access Manager
SSH Key Management solution
SSH Access Manager is a comprehensive access security management platform that permits IT professionals to easily establish and maintain an enterprise-wide SSH access security solution from a central location. It enables a team of system administrators to centrally manage and deploy ssh keys. This app is intended to be used in rather large environnements where access to unix accounts are handled with ssh keys. SSH Access Manager allows you to maintain user public keys. You can organise... -
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SpeedyQuant
Quantifies DNA, RNA or protein bands in agarose or acrylamid gels.
SpeedyQuant is a gel imaging/analysis software that automatically detects and quantifies gel bands (DNA, RNA, protein) in agarose or acrylamid gels. When calculating the relative strength of each band (% of most prominent band) it takes the background noise into account. This leads to accurate and comparable results. Several options can be used to tune the detection process. Here we provide the source code of the program (Perl script) that can be run on any OS with Perl installed (e.g.... -
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TrackNode
SNMP-Based Network Node Polling Suite
TrackNode is designed to become a robust, extensible architecture for polling arbitrary system metrics over SNMP. This project is still in early experimental phases, so functionality is limited (the current code is more of a PoC than anything else). No warranties are provided for the functionality of this code. The licensing agreement for this code may be found at http://creativecommons.org/licenses/by-nc-sa/3.0/. All rights not expressly conveyed within the license agreement are... -
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check_snmp_disk
Nagios/Icinga plugin that checks disk usage via snmp
This plugin could be added as an external check to your nagios/icinga installation to provide detail information about disks usage on your hosts. See README.txt for details -
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CoVEC
Consensus Variant Effect Classification
The package provides SVM models to be used with SVMlight (http://svmlight.joachims.org/) for drawing a consensus out of individual 3rd-party predictions about the effect of mutations. The 3rd party tools are SIFT, Polyphen2, SNPs&GO and Mutation Assessor. The package also provides a series of Perl modules and scripts to assist in the preparation of data. The modules can be used to build custom tools and pipelines, whereas the scripts provide basic executable implementations based on the... -
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C-Lesh and SMW Engine
C-Lesh is a game programming language for 2D games.
C-Lesh is a game programming language for 2D games - mainly arcade and platform games. When combined with the Super Mario World (SMW) engine you can create awesome 2D platform games like Super Mario World. This language evolved from a "clone" of TI-BASIC which I began developing when I was having memory (segmentation fault) bugs with C. C-Lesh lacks memory allocation and destruction. There is no need to use pointers and you can never get memory leaks or program crashes caused by memory... -
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MspJI-seq_pipeline1.0
an pipeline for MspJI-digesting sequencing in DNA methylation study
MspJI-seq_pipeline1.0 is pipeline for MspJI-digesting sequencing in DNA methylation study. Modification-dependent restriction endonuclease MspJI digestion coupled with next generation sequencing could estimate the methylation state of "CNNR" Cytosine location in the genome by mapping high throughput reads to the reference sequences. MspJI-seq_pipeline1.0 is designed to be a general-purpose mapping program to handle these special characteristics of MspJI-seq. Its alignment is based on the... -
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Annoying Pomodoro
A pomodoro timer with several options that keeps beeping when done.
NOTE: This is a very old, buggy, and obsolete pomodoro timer I made before I was a professional programmer. There is a much newer version with both a jar for desktop and an Android app on my github: https://github.com/RS17/AnnoyingPomodoro. Also on the Play store. This is a pomodoro timer. It has a bunch of options, including: - Keeps beeping when timer runs out to annoy you into taking a break/starting to work again. - Ticking noise - Automatically keeps track of pomodoros... -
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TheBible
An Offline Portable Bible
The Bible is an offline portable bible which contains all the features needed for a bible student. Some of the features of TheBible which makes it unique are: 1. It is as tiny as 3.5 MB and its portable. 2. it has no dependencies. 3. It works on all windows systems from win98 to win8. 4. Passage lookup feature which gives you the very feel of using a bible. 5. Keyword search feature which allows you to search for a specific keyword and get all the results in the... -
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ProCoS
A Protein Composition Calculator
Author: Lavanya Rishishwar ProCoS (Protein Composition Server, script version) is a one stop shop for computing all the possible types of peptide compositions, whether it be Pseudo Amino Acid Composition (PAAC)(Chou 2001), Amphiphilic Pseudo Amino Acid Compostion (APAAC)(Chou 2005), Five Factor Solution Score (5FSS)(Chou & Cai 2005), Amino Acid Composition, Dipeptide Composition, Tripeptide Composition... Polypeptide Composition. The program was previously released as an applet as well as... -
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EasyWall
Easy to use firewall for linux beginners.
New improved iptables tool, based on my earlier project Easy Linux Firewall, but rewritten from scratch using Perl. It's a simple rewrite for now, but i am working on adding some new features like. Some of the improvements will be web administration panel, automatic filtering daemon, TCP listener providing easy to use API so you can integrate it on many servers and centralize them in to one Web interface to control all of them. I am open to new ideas and also any kind of contributors,...