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QPDF is a C++ library and set of programs that inspect and manipulate the structure of PDF files. It can encrypt and linearize files, expose the internals of a PDF file, and do many other operations useful to end users and PDF developers.

pstoedit is a tool converting PostScript and PDF files into various other formats suported by different drawing editors. As a prerequesite it needs GhostScript to be installed (binary installation is sufficient).

PDF Chain is a graphical user interface for the PDF Toolkit (PDFtk). The GUI supports all common features of the command line tool in a comfortable way.

The PoDoFo library is a free, portable C++ library. It can parse and modify existing PDF files and create new ones from scratch. It also includes several tools to work with PDF files. It features an unique approach which provides access to PDF documents via an object tree. Therefore, PDFs can be created and or manipulated using a simple tree structure. Development of PoDoFo has been moved to GitHub: https://github.com/podofo/podofo Please raise new issues in the GitHub project.

Free editor for PDF documents. Complete editing of PDF documents is possible with PDFedit. You can change raw pdf objects (for advanced users) or use many gui functions. Functionality can be easily extended using a scripting language (ECMAScript).

PDF Organiser gathers PDF files distributed throughout your system into one place where you can organise them into folders of your choosing. It has minimal dependencies of gtk and json-glib so it is very lightweight and fast with a binary size of less than 45 Kb.