Ginkgo CADx is an extensible multi-platform Open Source Medical Imaging software which provides a complete DICOM Viewer solution with advanced capabilities.
Open DICOM Viewer is a small display of medical images. Aimed at displaying images in a web page or patient CD. Developed in Java 1.6.
eAdventure (formerly <e-Adventure>) is an authoring tool for the creation of point-and-click games, especially designed for educational purposes. eAdventure is SCORM compatible so eAdventure games can be integrated with LMS like Moodle. More info at: http://e-adventure.e-ucm.es
Download data from medical device interfaces in ICU & Anaesthesia
A C# .NET app to download or capture data from several medical device interfaces such as Datex AS3 S/5 Anesthesia, Philips Intellivue, GE Dash, Mindray patient monitors, GE Engstrom, Draeger (Medibus), Maquet ventilators, Fresenius Agilia syringe and volumetric pumps. Requires Visual Studio 2015, .NET 4 or Xamarin Studio to compile. Android version requires Xamarin Studio, Android SDK to compile. Support for capture from other monitors is planned in future.
Generating documents and reports, offline enabled and reliable.
The library is a fork of the popular open source Jasper Reports and supports the common features provided by Jasper Reports, but offline and for mobile apps. The PDFReporter library supports iOS, Java and Android library. For your document and report design you use the PDFReporter Studio where you can visualize your data. If you want to use the library commercially please visit our official webpage.
Electronic Health Record (EHR / EMR)
GaiaEHR(Electronic Health Records) is a Open source Web-Based Software for: Medic Practice management Electronic Medical Records Prescription writing and medical billing application And it can be installed on the following systems: Unix-like systems (Linux, UNIX, and BSD systems) Microsoft systems Mac OS X And other platforms that can run Apache Web server, MySQL We have some other projects here in GaiaEHR.org, some private and other are GPL'd. Demo: http://gaiaehr.org/demo/ user: admin password: pass
Statistical data analysis
Programa multiplataforma de libre distribución para el análisis estadístico y epidemiológico de datos. Free distribution cross-platform program for statistical and epidemiological analysis of data. Sitio web: http://www.sergas.es/Saude-publica/EPIDAT Souceforge: https://sourceforge.net/projects/epidat/ Wikipedia: https://es.wikipedia.org/wiki/Epidat
EHRflex is an archetype-based clinical registry system (EHR) independent of a particular reference model. It uses clinical archetypes as guidelines for the automatic generation of web interfaces, oriented to a clinical use and data introduction.
(Q)SAR Model Reporting Format Inventory
In the regulatory assessment of chemicals (e.g. under REACH), Quantitative Structure Activity Models (QSAR) are playing an increasingly important role in predicting properties for hazard and risk assessment. This implies both a need to be able to identify relevant QSARs and to use them to derive estimates and/or have access to their precalculated estimates. To help meet these needs, the JRC QSAR Model Database is established and freely accessible through http://qsardb.jrc.ec.europa.eu/qmrf The QSAR Model Reporting Format (QMRF) is a harmonised template for summarising and reporting key information on QSAR models, including the results of any validation studies. The information is structured according to the OECD validation principles. Download the QMRF Editor in order to describe your models in QMRF format and send the descriptions to JRC-COMPUTOX@ec.europa.eu to have them included in the database. More at http://qmrf.sourceforge.net/
Accurate and efficient Java library that simulates biological models
The Systems Biology Simulation Core Library provides an efficient and exhaustive Java implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution. This library is based on the JSBML project and can be used on every operating system for which a Java Virtual Machine is available. Please note that this project does not contain any user interface, neither a command-line interface, nor a graphical user interface. This project has been developed as a pure programming library. To support the MIASE effort, it understands SED-ML files. Its abstract type and interface hierarchy facilitates the implementation of further community standards, such as CellML. When using this library, please cite: http://www.biomedcentral.com/1752-0509/7/55.
A CBLS Engine in SCALA, NOW part of OscaR
Asteroid has been merged with Scampi, to give rise to OScar. Follow us on https://bitbucket.org/oscarlib/oscar/wiki/Home Asteroid offers a powerful framework for developing constraint-based local search solution to combinatorial problems. This technique provides good scalability to real-world problems. It includes a library of standard constraints and invariants to declaratively define the problem you want to solve, and it also provides powerful search mechanisms.
This application allow user to predict dissolution profile of solid dispersion systems based on algorithms like symbolic regression, deep neural networks, random forests or generalized boosted models. Those techniques can be combined to create expert system. Application was created as a part of project K/DSC/004290 subsidy for young researchers from Polish Ministry of Higher Education.
Intellect Modeling Kit ≠AI Intellect-based apps development suite
Intellect Modeling Kit is an alternative to traditional Artificial Intelligence, intended to build apps assisting human intellect on the steps of its activity: * Observation * Producing propositions based on knowledge * Elimination of impossible propositions * Selection and verification of the most appropriate propositions * Memorizing - converting data to information and new knowledge item creation * Abstraction finding – building artificial objects representing group of real objects, featuring typical signs of group Any human knowledge written and spoken can be uploaded to IMK in a straight way by any expert not familiar with software coding. The IMK components are designed to create ready-to-use software application using simple text files provided by people. IMK accepts human knowledge and develops new knowledge together with people. The activity of IMK could be verified by human expert on every stage. IMK assists intellectual activity, but does not replace us.
TTS for Basque Lapurdian dialect
AhoTTS Iparrahotsa is the TTS developed at the Aholab Signal Processing Laboratory of the University of the Basque Country (UPV/EHU) for the Lapurdian dialect of Basque. This dialect is spoken at the Northern area of the Basque speaking area (French region). This project was funded by the Euroregion Aquitaine-Euskadi under grant EUSKADI-2012-004.
Real-Time Processing Library for OSHW Biomedical Sensors
Applications involving data acquisition from sensors need samples at a preset frequency rate, the filtering out of noise and/or analysis of certain frequency components. We propose a novel software architecture based on open-software hardware platforms which allows programmers to create data streams from input channels and easily implement filters and frequency analysis objects. The performances of the different classes given in the size of memory allocated and execution time (number of clock cycles) were analyzed in the low-cost platform Arduino-Genuino. This library is free to use for research. Please cite above publication.
AS2Secure is a PHP Lib to allow you to send and receive AS2 message from partners. Based on OpenSSL, documents are SIGNED and CRYPTED to build SMIME messages ready to be sent over HTTP connection.
Aarohan e-Health is an EHR Software can be used by physician to mid-size hospitals with several integrations.
Dissolution profile comparison Model Dependent-Independent Approach
Dissolution profile comparison (Biowaiver aid) Model Dependent-Independent Approach scripts for in-vitro dissolution profile comparison as proposed by Sathe et al. in 1996 (Sathe PM, Tsong Y, Shah VP. In-vitro dissolution profile comparison: statistics and analysis, model dependent approach. Pharm Res. 1996 Dec;13(12):1799-803) and Tsong et al. in 1996 (Tsong Y, Hammerstrom T, Sathe P, Shah VP. (1996) Statistical Assessment of Mean Differences between Two Dissolution Data Sets, Drug Info. J. 30:1105-1112).
Decision support tool that assesses breast cancer risk and identifies risk-reducing interventions. Includes web service implementations of established models -- BRCAPRO, Gail, Claus, BCSC Density -- for calculating breast cancer risk.
Census is a comprehensive cross-platform project manager and integration hub for NONMEM, the gold standard tool for model-based pharmacometric data analysis.
Differential Expression Analysis for Pathways
This project contains the source code associated with the PLoS Computational Biology publication: "Differential Expression Analysis for Pathways". The paper text can be found here: http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002967
Erciyes RIA Development Framework is a rich Internet application development framework. It utilizes Flash with Ajax-like web requests on the client. Server-side process is carried using IIS and ASP.NET. Both Oracle and MSSQL support is provided.
GraphCAD is a pseudo 3D Computer Aided Design (CAD) program to modeling dinamic and static objects, basics on graph theory. GraphCAD may be used as GIS, Medical Disgnostic, Engineering, Education and Mathematical modeling tool.
Extensible Brainwave Entrainment library for Java
LibBWEntrainment is a Free and Open Source Brainwave Entrainment Library for Java. *** It is not a standalone application. *** The library is very flexible, allowing different types of renderers (isochronic, binaural, ...) as well as multiple output devices (speakers, file, socket or even screen), and it can easily be ported to other languages because it doesn't use any proprietary Java feature. Current features: -Javadoc and examples -Extremely lightweight, yet flexible -Easy to use -XML Presets -Multiple Entrainment Tracks -Looping -Isochronic rendering -Output to PC and Android -Output to MP3/FLAC/Wav file -Output to raw Stream Compared to my old LibBinaural, this is twice as fast and much more flexible. A project using this library is available here https://sourceforge.net/projects/isochronic/.
Multi-technology, INDEL aware error correction for NGS data
MuffinEC is an error correction software capable of handling all types of errors (insertion deletions, mismatches and unknown bases). It officially supports four technologies (Illumina, 454, ion Torrent and PacBio - experimental) and it also has a generic setup for others (old and/or new). It is released under LGPL version 3.0. MuffinEC can use multicore systems, thanks to its OpenMP implementation. We are developing the 2nd version of MuffinEC. The beta version is already available online. The changes are listed in the VERSION_HISTORY file. Please report any problem you may encounter at the email address specified in the README file. We really appreciate your help.