A barcode encoding library supporting over 50 symbologies.
Encodes data into any of the following: Australia Post barcode, Aztec Code, Aztec Runes, Channel Code, Codabar, Codablock-F, Code 11, Code 128, Code 16K, Code 2 of 5 (Including IATA, Datalogic, ITF14, Deutsche Post Leitcode and Identcode), Code 32 (Italian Pharmacode), Code 39, Code 39+, Code 49, Code 93, Code One, Data Matrix (ECC200), DotCode, Dutch Post KIX, EAN, Grid Matrix, GS-1 DataBar, Han Xin Code, HIBC, Japan Post, Korea Post, LOGMARS, MaxiCode, MSI, PDF417 and Micro PDF417, Pharmacode, POSTNET, PLANET, QR Code and Micro QR, Royal Mail 4-state (RM4SCC) and Mailmark, Telepen, UPC-A and UPC-E, UPNQR and USPS Intelligent Mail. Also supports full range of Unicode (UTF8) input using automated ECI switching for encoding in multiple languages and GS-1 data input mode. Save to PNG, BMP, TIF, GIF, PCX, SVG, WMF and EPS output file formats. Includes CLI and GUI interfaces and fully documented API for integrating with other projects.
3270 Terminal Emulator
x3270 is a suite of 3270 terminal emulation tools. x3270 is an interactive X11 client, c3270 is curses-based interactive client, and s3270 and tcl3270 are scripting tools for writing screen-scraping applications. wc3270 is the Windows console client and ws3270 is the Windows screen-scraping tool. Includes IND$FILE support, DBCS, and more.
Cross-platform DICOM implementation
Grassroots DiCoM is a C++ library for DICOM medical files. It is accessible from Python, C#, Java and PHP. It supports RAW, JPEG, JPEG 2000, JPEG-LS, RLE and deflated transfer syntax. It comes with a super fast scanner implementation to quickly scan hundreds of DICOM files. It supports SCU network operations (C-ECHO, C-FIND, C-STORE, C-MOVE). PS 3.3 & 3.6 are distributed as XML files. It also provides PS 3.15 certificates and password based mecanism to anonymize and de-identify DICOM datasets.
Open Source PKI solutions
The OpenCA PKI Development Project is a collaborative effort to develop a robust, full-featured and Open Source out-of-the-box Certification Authority implementing the most used protocols with full-strength cryptography world-wide.
professional CRM and groupware service, ready for the cloud
NEW VERSION 4.1.0: openCRX is a professional CRM service (customer relationship management) deployable to all major platforms. openCRX is multi-entity enabled, scalable, a real enterprise-class CRM-solution that runs on Apache TomEE.
Avalon Toolkit for SMILES-based cheminformatics services
The Avalon Cheminformatics Toolkit contains tools to render and canonicalize SMILES and manipulate MOL file and related formats as well as structure fingerprinting.
Virtual Screening software for Computational Drug Discovery
PyRx is a Virtual Screening software for Computational Drug Discovery that can be used to screen libraries of compounds against potential drug targets. PyRx enables Medicinal Chemists to run Virtual Screening from any platform and helps users in every step of this process - from data preparation to job submission and analysis of the results. While it is true that there is no magic button in the drug discovery process, PyRx includes docking wizard with easy-to-use user interface which makes it a valuable tool for Computer-Aided Drug Design. PyRx also includes chemical spreadsheet-like functionality and powerful visualization engine that are essential for Rational Drug Design. Please visits PyRx home page to learn more about PyRx and watch videos on how to use it.
DICOM Anonymizer replaces the patient names in all the DICOM files in a folder (and sub-folders) with other strings you assigned. Works as a batch and works fast. Supports number index. Anonymizing is required for medical image processing.
This project, developed at University College London, contains programs to perform rigid, affine and non-linear registration of nifti or analyse images. Two versions of the algorithms are included, a CPU- and a GPU- (using CUDA) based implementation.
Generalized Radiation Observation Kit. Java toolkit (based on David Clunie's PixelMed DICOM toolkit) for extracting CT radiation dose information from DICOM image archives.
This software aims to provide a free, open source Java based Clinic/Hospital Management Software. Clinics and hospitals in resource constrained countries can find this software as an alternative to other expensive commercial software.
This project, developed at UCL London, provides code for tomographic reconstruction. NiftyRec is written in C and has Python and Matlab extensions. Computationally intensive functions have a GPU accelerated version based on CUDA.
SIVIC is an open-source, standards-based software framework and application suite for processing and visualization of DICOM MR Spectroscopy data. Through the use of DICOM, SIVIC aims to facilitate the application of MRS in medical imaging studies.
A smart search engine for medical documents
TIES (Text Information Extraction System) is a clinical text search engine that uses Natural Language Processing techniques to extract medical concepts from free text clinical reports. It provides secure de-identified access to this information and has in built collaboration tools and honest broker functionality. It is licensed for academic use under the BSD license. For commercial use please contact Nexi at http://nexihub.com
Parallel Iterative Deconvolution is a multithreaded ImageJ plugin for iterative image deblurring.
MDSTk is a collection of 2D/3D image processing tools aimed at medical images. It contains routines for volume data processing (3D filtering, segmentation, etc.) as well as fast low-level vector graphics library for surface and tetrahedral meshing. MDSTk has been forked by 3Dim Laboratory s.r.o. to provide better support and further push its development forward. Please check VPL (Voxel Processing Library) project available on Bitbucket (https://bitbucket.org/3dimlab/vpl).
The MITRE Identification Scrubber Toolkit (MIST) is a suite of tools for identifying and redacting personally identifiable information (PII) in free-text medical records.
This project is the implementation of The Virtual Collaborative Environment (VCE) which supports clinical applications of 3D modeling in medicine. The system is based on three layer client-server architecture.
ECMOjo is a simulator and trainer for extracorporeal membrane oxygenation (ECMO). ECMOjo consists of a graphical user interface to allow interaction and train ECMO practitioners.
Pyx12 is a python based ANSI X.12 to XML EDI translator and validator
Development has been moved to github.
Nifty Sim is a high-performance nonlinear finite element solver, developed at University College London. A key feature is the option of GPU-based execution, which allows the solver to significantly out-perform equivalent commercial packages.
A collection of code, bundled into a single R package, to perform several aspects of data management, image pre-processing, data analysis and statistical inference related to the quantitative analysis of dynamic contrast-enhanced MRI (DCE-MRI).
The Disease Simulation Framework (DiSiF) represents a spatial simulation environment for infectious viral disease spread. The framework currently embodies a very simple framework for simulation in 2D space with focus on SARS and the Common Flu.
IQA is a C library for objectively measuring image/video quality. It implements many popular algorithms, such as MS-SSIM, MS-SSIM*, SIMM, MSE, and PSNR. It is designed to be fast, accurate, and reliable. All code is Valgrind-clean and unit tested.
The Medical Imaging Interaction Toolkit (MITK) is a C++ class library for the development of medical imaging software with a high degree of interaction. The example application features DICOM viewing, measurement, image segmentation and registration.