An intuitive molecular editor and visualization tool
Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science and related areas. It offers a flexible rendering framework and a powerful plugin architecture.
Bowtie, an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers. Please cite: Langmead B, et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10:R25.
GMOD is a set of interoperable open source software components for visualizing, annotating, and managing biological data. See http://gmod.org for more.
CryptoPy is a pure python implmentation of cryptographic algorithms and applications. The algorithms are developed for readability more than speed. The collection now includes IEEE 802.11i specific algorithms that generated the test vectors for 802.11i.
myColex is a complete museum management and collection documentation system with longterm archiving capabilities based on Apache/PHP and mySQL. Manage your object inventories, events, pictures, addresses e.g. with your browser.
slclust: a utility that performs single-linkage clustering with the option of applying a Jaccard similarity coefficient to break weakly bound clusters into distinct clusters. The slclust utility is written in ANSI C++.
GLEAN is an unsupervised learning system to integrate disparate sources of gene structure evidence (gene model predictions, EST/protein genomic sequence alignments, SAGE/peptide tags, etc) to produce a consensus gene prediction, without prior training.
The goal of the AppCrack project is to allow users to decompile/disassemble .exe programs (allowing users to see the source code) using a simple program instead of long, tedious, unreliable solutions like debuggers.
An nmap output parser for scan data using PERL. Nmap Parser is a PERL module that makes developing security and audit tools using nmap and PERL easier. nmap is one of the best security scanners.
PerlCE provides pre-built perl binaries and some popular extensions for various WinCE platforms
SPM surfrend toolbox is a suite of scripts that add surface-based rendering capabilities to SPM99/2 generated statistical maps.
A cross-platform interface for the *.mfj file format.
mobcalPARSER is a command line based PERL frontend/interface for MOBCAL with limited wrapper functionality. "MOBCAL - A Program to Calculate Mobilities" is available from Professor Martin F. Jarrold's webpage http://www.indiana.edu/~nano/software.html.
PerlMol is a collection of Perl modules for chemoinformatics and computational chemistry with the philosophy that "simple things should be simple". It should be possible to write one-liners that use this toolkit to do meaningful "molecular munging".
A C++ library for Bayesian computation, including a collection of more generally-applicable utilities.
CloudBurst is a parallel read-mapping algorithm optimized for mapping next-generation sequence data to the human genome and other reference genomes, for use in a variety of biological analyses including SNP discovery, genotyping, and personal genomics.
Numerically estimate an efficiency of code construction algorithms. Randomly generate n binary words of length m with minimum Hamming distance d and create a prefix code (= retrieval tree) from them. Based on PhD work.
Time Travel is possible
Jay Olson and Timothy Ralph recently put forward a theory that entangled photons can travel through time or at least take a short-cut through time using their method. As I understand it, the first photon is destroyed when measured however an exact copy is created in the future using qubits from the original photon. This is a simulation using one of their examples. I hope it's accurate and my apologies if it's not. Email: email@example.com
The Introspector enables the programming tools that deal with source code such as the compiler to communicate in a standard and neutral manner reducing the accidental cost of programming. http://github.com/h4ck3rm1k3/
Vilegust is a basic-like compiler/interpreter.
Vilegust - named for the codesmells that eventually come of such projects - is a basic-like interpreter/compiler project in vb.net that will eventually be self-compilable.
BlueJam is a Java-based algorithmic music composer that uses evolutionary techniques and heuristics. Originally intended to evolve solos on the blues scale. BlueJam interfaces with Pure-Data to give real-time output.
A simple tic-tac-toe game programmed in the Java programming language. Whats different about this version of tic-tac-toe is that the program will learn over time by playing against an opponent (i.e. a human) using different learning techniques.
alinks is a set of POJO describing pedigree graphs.
This library provides an Opensource ATPG API to build your programs on. The library implements a lot of template c++ classes and functions that provide Combitional/Sequential logic simulation, and fault simulation functionality(semi-PROOFS).
Coding convenient Aero & Astro functions into one easy to use package. From rocket engine design, to flight and space dynamics.
This project is result of a challenge "creating a fractals generator by using only C++ and Qt", AiFractals is based on Qt Script and you can enjoy by generating your custom fractals =) by your own algorithms (Qt Script)