Open source Health IT for the planet
OpenMRS is a community-developed, open source, enterprise electronic medical record system. Our mission is to improve health care delivery in resource-constrained environments by coordinating a global community to creates and support this software.
Real-time frameworks/RTOS based on active objects & state machines
Real-time frameworks/RTOS for building responsive and modular real-time embedded software as systems of active objects (concurrent state machines). The QP family consists of QP/C, QP/C++, and QP-nano frameworks, which are all strictly quality controlled, superbly documented, and commercially licensable. The behavior of active objects (a.k.a. actors) is specified in QP by means of hierarchical state machines (UML statecharts). The frameworks support manual coding of UML state machines in C or C++ as well as automatic code generation by means of the free QM modeling tool. All QP frameworks can run on bare-metal MCUs, completely replacing a traditional RTOS. Ports and ready-to-use examples are provided for major embedded CPUs, such as ARM Cortex-M, ARM7/9, MSP430, as well as Arduino and mbed. QP/C and QP/C++ can also work with a traditional RTOS/OS, such as ThreadX, FreeRTOS, embOS, and uC/OS-II as well as Linux (POSIX), Windows.
Rapid data integration framework
Java based data integration framework; can be used to transform/map/manipulate data in various formats (CSV,FIXLEN,XML,XBASE,COBOL,LOTUS, etc.); can be used standalone or embedded(as a library). Connects to RDBMS/JMS/SOAP/LDAP/S3/HTTP/FTP/ZIP/TAR.
Framework & GUI for Bayes Nets and other probabilistic models.
UnBBayes is a probabilistic network framework written in Java. It has both a GUI and an API with inference, sampling, learning and evaluation. It supports Bayesian networks, influence diagrams, MSBN, OOBN, HBN, MEBN/PR-OWL, PRM, structure, parameter and incremental learning. Please, visit the license section of our wiki (https://sourceforge.net/p/unbbayes/wiki/License/) for more information about our licensing policy.
Security Officers Management and Analysis Project (SOMAP) is all about defining security management work methods and supplying Security Officers with tools to do their job more efficient and following standards easily.
Parallel Spectral Deconvolution is a multithreaded ImageJ plugin for spectral image deblurring.
Parallel Iterative Deconvolution is a multithreaded ImageJ plugin for iterative image deblurring.
State machine framework for reactive embedded systems
RKH is a generic, flexible, modular, highly portable, ANSI-C compliant, and open-source development tool for implementing hierarchical state machines based on modern state machine concepts. This modern techniques are used to give an abstract description of the dynamic behavior of a system in a substantial manner. The RKH not implements neither entire UML specs. nor entire Statechart specs. Instead, the RKH intention is to support just enough basic concepts of that powerful tools to facilitate the reactive-system modeling holding a solid, and efficient implementation. Broadly speaking, the RKH implementation has been designed from the ground up to be used in 8-bits platforms but can be easily adapted to 16 or 32-bits platforms.
Reporting, Dashboarding, Analytic, Self-service BI, Ad-hoc reporting
Active Intelligence Server 2 (AIS) is a data visualization tool and fully featured reporting server which enable users from open source community to host any reports created using BIRT, Jasper and Pentaho community edition allowing organization to leverage open source technologies and enable them to use AIS as a reporting server to deploy their existing and new reports seamlessly onto AIS for secure sharing the information in different file formats and schedule to make system automation and much more. AIS comes with self-service BI capabilities enabling end users to make the data-driven decision at the right time, all with minimal IT dependency. Tightly integrated user and role management ensure correct information distribution that prevents unauthorized access to information, collaboration is ever so easy with AIS that people with no BI knowledge can start real-time collaboration in minutes. AIS 2 is also available from the website http://activeintelligence.co.uk/download
Bisulfite alignment On Nodes of a cluster
Bison allows users with access to a computer cluster to rapidly align whole-genome bisulfite sequencing or RRBS reads. It can align both directional and non-directional libraries and uses bowtie2. Multiple compute nodes are not absolutely required, but will make the alignment process faster. Further details available on the Wiki page. Help also available on SEQanswers (http://seqanswers.com/forums/showthread.php?t=31314) or by creating a ticket here. You can now track the development on github (https://github.com/dpryan79/bison). There is now a tutorial available in the downloads here: http://sourceforge.net/projects/dna-bison/files/bison_tutorial.tar.gz/download .
Mindmeld is an advanced knowledge solution that fosters the capture and delivery of knowledge across a company or community.
PKI & Card Management System to issue and manage tokens & certificates
The QR-CERT software is a specialized package of applications dedicated for the development of a Public Key Infrastructure system as well as the cards personalization and management system. The software contains a number of functional modules, enabling a flexible selection of functionalities for implementation. The software is dedicated for large organizations and corporate environments, with a PKI infrastructure and microprocessor cards. The QR-CERT is a solution both for the companies which plan to build their own PKI infrastructure and entities planning to provide services in this respect. This software enables the implementation of advanced security mechanisms, such as: secure e-mail (S/MIME), electronic signature (PKCS#7, XAdES), network transmission protection (IPSEC, SSL/TLS) and strong authentication for service portals (HTTPS) or strong authentication of users for the Windows ActiveDirectory domain.
Gestion de Cabinet Medical / Medical Patient Record
Since 2 months, new version will arrive in QT5, with better integration of multimedia document and multilanguage support. If you have some specificity in your country, tell us we can integrate it. Medintux est une suite logicielle pour la gestion du cabinet médical et des services hospitaliers. Agrément ROSP, Compatible HAS avec le Vidal ou Thériaque, CIM10, codage CCAM. Liaison Sesam Vitale, Hprim, Apicrypt, Sigems. 100% Paramétrable et personnalisable. Environnement : Fonctionne sous MAC, Linux, PC, Android et mode Web intégré dans un navigateur. Fonctionnalités : Comptabilité, Gestion du dossier patient, Gestion documentaire, Gestion des admissions et des salles d'attentes. Aide à la prescription.... Base de donnée : Gestion client serveur avec Mysql. Supporte des milliers de dossiers sans ralentissement. Une communauté active avec plusieurs centaines d'utilisateurs au quotidien. Medintux est un projet mature utilisable au quotidien
Encompasing office management healthcare software for medical practices, doctors groups, DMEs, retailers, etc. It does User/patient management, point of sale, scheduling, sign-in, inventory, insurance claims, accouting, etc. Any OS!
A smart search engine for medical documents
TIES (Text Information Extraction System) is a clinical text search engine that uses Natural Language Processing techniques to extract medical concepts from free text clinical reports. It provides secure de-identified access to this information and has in built collaboration tools and honest broker functionality. It is licensed for academic use under the BSD license. For commercial use please contact Nexi at http://nexihub.com
The Interactome-Transcriptome Integration (ITI) algorithm allows the analysis of gene expression data by superimposition of a large scale protein-protein interaction data (human interactome) over several gene expression datasets. ITI extracts regions in the interactome with differentiating expression over two conditions. These subnetworks can that be used to build a generalizable and stable genomic signature for genomic/cancer classification.
VetoSys is a management system that includes whole veterinary clinic management : animals, owners, account controls... You can use this tool to achieve its sales to the fund, its orders for products or veterinary services. A module for inventory are available.
MDG for Sparx' Enterprise Architect to Create TRAK arch. descriptions
Custom add-in (MDG technology) for Sparx Systems Enterprise Architect UML modelling tool to create architecture descriptions using TRAK http://sf.net/projects/trak Provides: - the set of TRAK views that can be represented using UML. Each view display a custom toolbox palette with the objects and relationships that are needed for that TRAK view - relationships can be made directly from the objects on a view using the Quicklink feature which presents the allowed relationship(s) by TRAK between the pair of objects selected - a custom set of searches. When run these will list objects of a particular type (e.g. all Systems, all Enterprise Goals), potential quality problems (e.g. diagrams and objects without any description, objects not linked to any other), things of interest (e.g. open, closed concerns) and view-like results e.g. all structural relationships in the solution - scripts to generate views - model views to list objects meeting search criteria
The Huygens Remote Manager is an open-source, efficient, multi-user web-based interface to the Huygens software by Scientific Volume Imaging (http://www.svi.nl/) for parallel batch deconvolutions.
Avenzoar is a one-year exploration of renal cell carcinoma morphology and its related single nucleotide polymorphisms (SNPa) as a method of automating diagnosis of cancer by using a computer-aided decision tree controlled by analytical statistics.
A Deformable Medical Image Registration Toolbox
DRAMMS is a software package designed for 2D-to-2D and 3D-to-3D deformable medical image registration tasks. Released by Section of Biomedical Image Analysis (SBIA) at the University of Pennsylvania. Some typical applications of DRAMMS include, -- Cross-subject registration of the same organ (can be brain, breast, cardiac, etc); -- Mono- and Multi-modality registration (MRI, CT, histology); -- Longitudinal registration (pediatric brain growth, cancer development, mouse brain development, etc); -- Registration under missing correspondences (e.g., vascular lesions, tumors, histological cuts). DRAMMS runs in command line in UNIX/Mac OS, It accepts Nifti/ANALYZE/MetaImage image formats. It is fully-automatic --- takes two input images, and generates a registered image and (optionally) the deformation field. More information (installation, tutorial, manual, demonstration, FAQ, etc) can be found at http://www.rad.upenn.edu/sbia/software/dramms/ .
A neuroscientific knowledge management system for the published literature
The 3D Slicer is freely available, open-source software for visualization, registration, segmentation, and quantification of medical image data. Follow the link for more info: http://slicer.org
Awsome NUTS (AWNUTS) was a talker base directed to the visual challenged, having in mind that the best chat environment for the visual challenged are talkers with the help of Jaws. This project is now dead, it is recommended the use of TZMud instead.