Popular easy-to-use and secure password manager
Password Safe is a password database utility. Users can keep their passwords securely encrypted on their computers. A single Safe Combination unlocks them all.
A BibTeX replacement for users of biblatex, with full Unicode support
Easy lead sheets from text input
ChordPro creates elegant, stafless lead sheets for musicians needing only chords and lyrics. It processes plain text input in ChordPro format and it is a rewrite of the old though still popular Chord/Chordii programs.
Programming a Parrot AR.Drone 2.0 with Python - The Easy Way
The PS-Drone-API is a full featured SDK, written in and for Python, for Parrot's AR.Drone 2.0. It was designed to be easy to learn, but it offers the full set of the possibilities of the AR.Drone 2.0, including Sensor-Data (aka NavData), Configuration and full Video-support. The video function is not restricted to mere viewing, it is also possible to analyze video images data using OpenCV2. Obviously, the PS-Drone is perfect for teaching purposes; however, even the requirements for professional purposes can be satisfied. PS-Drone comes with a tutorial, explaining its most important commands and the drone's most important sensor values. The examples are easy to understand for people with little programming experience. A full list of commands and a description of all sensor data is available in a detailed documentation. It took several months to create PS-Drone, so it would be nice to get some donations for further development (e.g. Parrot's Bebop) and as a appreciation.
Monitor or control the progress of data through a pipe
PV ("Pipe Viewer") is a tool for monitoring the progress of data through a pipeline. It can be inserted into any normal pipeline between two processes to give a visual indication of how quickly data is passing through, how long it has taken, how near to completion it is, and an estimate of how long it will be until completion.
GMOD is a set of interoperable open source software components for visualizing, annotating, and managing biological data. See http://gmod.org for more.
Camino is a free, open-source software package for analysis and reconstruction of Diffusion MRI data. Download the latest version of the code here: For the latest version, tutorials and more information, visit http://camino.org.uk. CAMINO IS A RESEARCH TOOL ONLY AND SHOULD NOT BE USED FOR CLINICAL PURPOSES. In downloading the code you explicitly agree to this condition.
The C4C Lubuntu 16.04 ReSpin: A Christian Operating System
A free Christian operating system that is stable, fast and easily installed on most any computer manufactured in the last decade. This Christian Linux distribution is intended to lead unbelievers to a relationship with Christ and nurture believers in discipleship. About C4C: http://www.computers4christians.org/ Included in the C4C Lubuntu ReSpin: http://www.computers4christians.org/C4C.html Frequently Asked Questions: http://www.computers4christians.org/FAQ.html C4C Lubuntu 16.04 User Guide & Manual http://computers4christians.org/Manual/C4C-Lubuntu-16-04-ReSpin-Guide.pdf Start a C4C Chapter: http://www.computers4christians.org/Chapters.html
Conquest is a Unix/C port of a real-time, multi-player space warfare game that was originally written in RATFOR for the VAX/VMS platform by Jef Poskanzer and Craig Leres. It supports both curses and OpenGL interfaces. Sound is supported as well.
In silico knockouts for signaling pathways
Signaling pathways are complex and intertwined processes. The perturbation of biological systems can reveal the complicated interplay and dependencies of pathway components. isiKnock is a software to automatically conduct and visualize in silico knockouts for signaling pathways. isiKnock predicts the knockout behavior based on the calculation of signal flows at steady state. For an explanation of the concept of in silico knockouts, we refer to Scheidel et al. 2016 and Amstein et al. 2017. Scheidel et al. (2016) In silico knockout studies of xenophagic capturing of Salmonella. PLoS computational biology, 12(12), e1005200. Amstein et al. (2017) Manatee invariants reveal functional pathways in signaling networks. BMC systems biology, 11(1), 72.
The Kinetic Simulation Algorithm Ontology (KiSAO: http://co.mbine.org/standards/kisao) covers the most important algorithms and methods used to simulate and analyse biological models and their inter-relationships through their characteristics and parameters.
Embed C++ in Python source code, dynamically compile and access data
Python module to embed C/C++ code within Python source code and scripts. Automatically compile and dynamically link the code. Transparently allow native access to python data from C code and vice versa. Module provides all the "glue" to dynamically convert data types, arrays and structures.
MIDI software to play tones from the "overtone series"
The Twonker is a MIDI Plugin that allows a digital piano (or any MIDI instrument) to play tones from the Overtone Series. It is designed to run within most Digital Audio Workstations as a Synth Plugin on Windows, MacOS, and Linux (although precompiled binaries are not yet available for MacOS). When a length of string (or a column of air) is made to vibrate it produces a pitch. This initial pitch is called the Fundamental. While the string is vibrating at the Fundamental frequency, the string simultaneously vibrates at many other frequencies as well. The pattern of frequencies is always the same and is based on the frequency of the Fundamental itself. The Twonker allows a musician to play overtones in a predictable and flexible manner, using a regular MIDI-based keyboard. In essence, it behaves like twelve different pianos tuned to twelve different Overtone Scales (also called "Just Scales").
Modular JSON by trees and branches, pointers and patches
The 'jsondata' package provides for the modular in-memory processing of JSON data by trees, branches, pointers, and patches. Current version supports JSON/RFC7951, JSONPointer/RFC6901, and parts of JSONPatch/RFC6902. The syntax primitives of underlying layers are provided by the imported packages 'json' and 'jsonschema' in conformance to related ECMA and RFC standards and proposals. The data is represented by in-memory tree structures with dynamically added and/or removed branches. The data could be validated by JSON schemas, and stored for later reuse.
A Religous AD&D Clone
Aphrodite gives books to an angel; and Ares steals them and hides them in the Earths. This starts a war between the gods and the mortals.
BCPL was designed by Martin Richards at Cambridge University (1966)
Here you will find a collection of BCPL tools I've gathered from the net, cleaned up and ported to the Atari ST. This involved fixing bugs, reducing stack usage and making the code compile in 16bit via Pure C (Turbo C for the Atari ST). Source credits include: Martin Richards - BCPL Kit http://www.cl.cam.ac.uk/~mr10/ Robert Nordier (Translated interp to C) http://www.nordier.com/ Serge Vakulenko (Translated cg/syn/trn to C) https://github.com/sergev/b I'm sure there are other names, but those are the ones on the source files. The code now compiles clean for the Atari ST, so it should work for anything else.
Visualization and analysis of functional modules in biochem. networks
MonaLisa uses Petri net representation to model and analyse biochemical networks. Here, all reactions of a pathway are modeled by their metabolites and reactions. These are represetend by different kind of vertices, metabolites as circles and reactions as rectangles. The Petri net formalism offers a rich variety of mathematical anaylisis aproaches to check the model for structual faults or to identify biological modules. Furthermore, MonaLisa can visualize the computed results, so that a quick visual inspection is possible. This will help especially for handeling big models.
Post-Transcriptional Exon Shuffling (PTES) Identification Pipeline
PTESFinder is a computational pipeline for identifying Post-transcriptional Exon Shuffling events from high-throughput RNAseq data. PTESFinder leverages the power of established RNASeq tools and systematically excludes all known classes of false positive structures by applying stringent filters designed to specifically target these false positives. PTESFinder compares alignment qualities of reads mapping to putative PTES structures with qualities of the same reads when mapped to genomic regions and canonically spliced transcripts. This approach increases the confidence in PTES supporting reads. Reads emanating from template-switching events are often characterised by large indels when aligned to the transcriptome. PTESFinder uses additional filters to exclude reads with ambiguous alignments around PTES exon-exon junctions, further increasing confidence in these supporting reads. PTESFinder identifies more PTES structures than other published methods whilst maintaining high specificity.
A fast UDP/IP-based data transfer protocol
Saratoga is a fast UDP/IP-based data transfer protocol for hop-by-hop transfers on privately-owned networks. Saratoga was first developed at Surrey Satellite Technology Ltd (SSTL) to download imagery from satellites., and has applications in scientific sensor networks.
PyUnit and PyDev extensions for arbitrary Executables
The package 'epyunit' provides extensions for PyUnit and PyDev. * Extensions for PyUnit - Unittests for arbitrary executables. * Extensions for PyDev - Automation of search and load of pydevd.py The extensions are applicable from commandline and/or within Eclipse. Online manuals: - https://pythonhosted.org/epyunit/ PyPi repository: - https://pypi.python.org/pypi/epyunit Current application examples are: - bash-core - http://bash-core.sourceforge.net Nickname - Dromi https://en.wikipedia.org/wiki/Dromi
A Perl based interpreter for a language which is a blend of Forth and APL. The power of lang5 stems from its arrays operations in conjunction with the underlying Forth programming paradigm of bottom up programming.
Moved to http://pyfilesysobjects.sourceforge.net/
This exists due to a typo only, see : https://sourceforge.net/p/pyfilesysobjects/
Filesystem as Class and Object Hierarchy - Files, Dirs, and Branches
The 'filesysobjects' package provides utilities for the application of basic object oriented features onto filesystems. This includes basic coverage of the 'inspect' package for the simplified gathering of information on packages, modules, and files. Nickname - Yggdrasil https://en.wikipedia.org/wiki/Yggdrasil The component PySourceInfo is now a seperate project, see: http://pysourceinfo.sourceforge.net PyPi: https://pypi.python.org/pypi/pyfilesysobjects