Scaffold Hunter is a JAVA-based software tool for the analysis of structure-related biochemical data. It enables generation of and navigation in a scaffold tree hierarchy annotated with various data.
Open Source and data mining software
ADaMSoft is a free and Open Source Data Mining software developed in Java. It contains data management methods and it can create ready to use reports. It can read data from several sources and it can write the results in different formats.
Cross-platform DICOM implementation
Grassroots DiCoM is a C++ library for DICOM medical files. It is accessible from Python, C#, Java and PHP. It supports RAW, JPEG, JPEG 2000, JPEG-LS, RLE and deflated transfer syntax. It comes with a super fast scanner implementation to quickly scan hundreds of DICOM files. It supports SCU network operations (C-ECHO, C-FIND, C-STORE, C-MOVE). PS 3.3 & 3.6 are distributed as XML files. It also provides PS 3.15 certificates and password based mecanism to anonymize and de-identify DICOM datasets.
Centralized signing and verification
Sirius-Sign is a signing and verification server with it's focus on high throughput and easy integration into an existinig landscape. For signature creation smartcards with OCF and PKCS11 interfaces are supported. An EJB container is required.
BioSig is a software library for processing of biomedical signals (EEG, ECG, etc.) with Matlab, Octave, C/C++ and Python. A standalone signal viewer supporting more than 30 different data formats is also provided.
intracranial electrodes localization toolbox
iElectrodes is an open source toolbox to obtain intracranial electrode coordinates in the native or normalized MNI152 space in a semiautomatic way with minimal user intervention. It uses MRI and CT coregistered images. It is possible to add brain parcellations and brain surfaces. The toolbox is capable to work with ECoG (subdural grids and strips) and SEEG (depth) electrodes. In the presurgical evaluation of patients with drug resistant epilepsy is of great importance to know the intracranial electrodes coordinates and the anatomical description of these locations. Additionally, you can plan depth electrode implantation and then compare it with the real locations. Visit iElectrodes Wiki tab to learn more about the toolbox. Please report any bugs to email@example.com We are trying to make iElectrodes a great toolbox everyday! Thanks for your help! Additional scripts are provided to make image corregistations using SPM software.
MDG for Sparx' Enterprise Architect to Create TRAK arch. descriptions
Custom add-in (MDG technology) for Sparx Systems Enterprise Architect UML modelling tool to create architecture descriptions using TRAK http://sf.net/projects/trak Provides: - the set of TRAK views that can be represented using UML. Each view display a custom toolbox palette with the objects and relationships that are needed for that TRAK view - relationships can be made directly from the objects on a view using the Quicklink feature which presents the allowed relationship(s) by TRAK between the pair of objects selected - a custom set of searches. When run these will list objects of a particular type (e.g. all Systems, all Enterprise Goals), potential quality problems (e.g. diagrams and objects without any description, objects not linked to any other), things of interest (e.g. open, closed concerns) and view-like results e.g. all structural relationships in the solution - scripts to generate views - model views to list objects meeting search criteria
PFAAT is a Java-based multiple sequence alignment editor and viewer designed for protein family analysis. You can download PFAAT from http://pfaat.sourceforge.net/
Kablink open team collaboration software uses social networking to unify team workspaces w/ real-time web conferencing. Collaboration for knowledge networking, program management, communities-of-practice, telework, other business process/functional areas
Gfarm file system is a network shared file system that supports scalable I/O performance in distributed environment. It can federate local disks of network-connected PCs and compute nodes in several clusters.
C-level driver collection for MSP430 and derivatives
ocapi is an open source driver collection for MSP430 and derivative processors. It provides a C language application programming interface (API) for deploying individual processor capabilities. Current modules support serial communication via UART, I2C and SPI, digital I/O (GPIO), analog-to-digital conversion (ADC), Timers and so on. ocapi aims at being independent of the development host platform. So it should work, no matter if you live in the Windows, Linux or Mac world. ocapi is used as the hardware abstraction layer for the MSP430 port of the Takatuka Java virtual machine (JVM). Before it can be used, the library must be built from the sources provided here. The build environment allows for fine grained configuration of the library's functionality and target system.
Full-text index generator of OWL literals
owl-indexer generates full text index of OWL literal via either Apache Lucene or Sphinx Search. It is based on OWL API (https://github.com/owlcs/owlapi).
OS Optiek is a open source customer relationship management (CRM) software application for opticians.
a medical image conversion utility & library; hereby hoping to lower at least one barrier in medical research projects.
amilab is a tool for image processing that includes its own scripting language, and an interface for visualizing 2d/3d images and 3d surfaces. Its main application is medical image processing.
Out of Africa comes KwaMoja. A fresh start for webERP!
KwaMoja is designed to help you manage your business in a more efficient and profitable manner. It combines your book keeping needs with all the tools to plan your inventory purchases. It will let you know when your factory needs to start manufacturing parts in order to keep up with orders. It will help you better manage your cash flow. All these and more will help your business become more efficient, and greater efficiency will equal greater profits. KwaMoja is a fork of the once popular webERP project. WebERP has suffered in recent years with an increasingly abusive and dishonest style of management, which has seen the number of downloads go into decline. Many of us felt that the time was right to move the project on in a more open and community driven style.
The product of RapidASDev project is Rapid Application Service Development - RASD environment. It is based on cloud techniques and can be treated as development tool as a service. With RASD you can create your own applications or even system's. All you need is internet browser. The program you create is published as HTML5 service or REST service. All subprograms (look up's, ...) are published as HTML5 or. REST too. If you create batch program in PL/SQL you can use the same tool. All generated code can be overwritten with using triggers ON, PRE an POST (remember classical Forms) The best thing is that the development cycle is really fast. In few minutes you can have working prototype for users to discuss about their requirements.
This application allow user to predict dissolution profile of solid dispersion systems based on algorithms like symbolic regression, deep neural networks, random forests or generalized boosted models. Those techniques can be combined to create expert system. Application was created as a part of project K/DSC/004290 subsidy for young researchers from Polish Ministry of Higher Education.
Toxicity prediction for chemical compounds
A GUI application which estimates toxic hazard of chemical compounds. The latest version includes the following toxicity prediction modules: -Cramer rules (oral toxicity) -Toxicity mode of action via Verhaar scheme -Skin irritation and Eye irritation prediction -Benigni / Bossa rulebase for mutagenicity and carcinogenicity prediction -START biodegradation and persistence prediction -Skin sensitisation reactivity domain -Kroes TTC Decision tree -SMARTCyp - Cytochrome P450-Mediated Drug Metabolism and metabolites prediction -Structure Alerts for the in vivo micronucleus assay in rodents (ISSMIC) -Structural Alerts for Functional Group Identification (ISSFUNC) -Structural alerts associated with covalent protein binding and DNA binding. - Ames mutagenicity Toxtree provides a plugin framework to incorporate different approaches to the estimation. Platform independent (written in Java), with the use of The Chemistry Development Kit.
SIVIC is an open-source, standards-based software framework and application suite for processing and visualization of DICOM MR Spectroscopy data. Through the use of DICOM, SIVIC aims to facilitate the application of MRS in medical imaging studies.
Tiny ERP system for a salon
This tiny ERP system is specially designed for a salon. The main page of the software is a calendar which shows an overview of the appointments. The calendar can be switched to daily or montly overview. The Software also includes pages to manage customers and products. It is also possible to create reports such as revenue, best customers, best products and so on. It is also easy to create additional customers. Finally, the software is also multi-language capable. Currently it includes English and German.
Generating documents and reports, offline enabled and reliable.
The library is a fork of the popular open source Jasper Reports and supports the common features provided by Jasper Reports, but offline and for mobile apps. The PDFReporter library supports iOS, Java and Android library. For your document and report design you use the PDFReporter Studio where you can visualize your data. If you want to use the library commercially please visit our official webpage.
Open pharmacovigilance data extraction, mining and analysis tool
OpenVigil provides a webinterface to analyse pharmacovigilance data, i.e., spontanous or systematic collections of treatments (drugs) and observed adverse events ("drug side effects"). FDA Adverse Event Reporting System (AERS) and other pharmacovigilance data (e.g., Canadian or German) are supported. The OpenVigil web-based analysis tools offer several analysis modes like extraction, filtering, mining of data and analyses via measurements of disproportionality like proportional reporting ratio or reporting odds ratios) and export to spreadsheets programs like Microsoft Excel or statistics programs like R. OpenVigil 1 operates on raw data, OpenVigil 2 on cleaned data (using drugbank.ca and drugs@FDA), OpenVigilFDA uses the official FDA online API. OpenVigil 2 supports query for ATC codes or certain chemical moieties. Other tools of the OpenVigil project include a calculator for measurements of disproportionality for a 2x2 contingency table and a drugname mapper using RxNorm.
Record matching software
Libraries and command line tools for medical image processing.
This software provides libraries and command line tools for the processing and analysis of gray scale medical images.