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Jymini is a JavaScript minifier and obfuscator. While there are several of these out there, I couldn't find one that did exactly what I needed. This program is very flexible and has features that others don't.
obfuscate4e is an Eclipse feature to obfuscate plugins during their export. This feature provides an integrated proguard obfuscator, other obfuscators might be added as plugins. The project moved to http://code.google.com/p/obfuscate4e/
HDLObf is intended to be a HDL Obfuscator and identifier name change utility. Primarily designed for Verilog/SystemVerilog support will be added for VHDL/SystemC in future.
An API and a graphical tool for inspection (viewing, searching and comparing) and manipulation (modification, obfuscation, refactoring of methods, fields, attributes and code) of classfiles for the Java platform.
A tool that will obfuscate any .NET assembly along with its satellites (EXEs and DLLs) by disassembling it to IL code, performing obfuscation techniques, and assembling it back to an executable. Both a CLI (command-line interface) and GUI are available.
Stand-alone JAVA Email obfuscation tool for HTML pages. This tool can be used to process single pages, or whole webpage bundles, to protect email addresses occuring in them from spam bots and other harvesters, by hiding them using various methods.
Yet another Java obfuscation tool. This one has a bit of a different twist, in that it can obfuscate native methods by generating a .h file which #defines the original method names to the obfuscated ones. Built with Apache BCEL.
JarSpy - The Java Archive Spy. JarSpy provides insight into the contents of Java archive files (.jar, .zip, .ear, .war etc.). Eventually, JarSpy will provide the ability to modify the contents of Java archive files for instrumentation, obfuscation etc.
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JavaGuard is a general purpose bytecode obfuscator, designed to fit effortlessly into your regular build and testing process, providing peace of mind that your valuable Java code is more secure against decompilation and other forms of reverse engineering
JEST will be the Java bytecode engineering Swiss-Army Jackhammer.
It will include a disassembler, class browser, obfuscator, optimizer, class editor, and bytecode debugger, and have an intuitive GUI.
RotNN is a Python module that implements rotation encryption/obfuscation. The default action is similar to rot-13, but it can also rotate over the entire UNIX printable character set.