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Makagiga is an open-source, easy-to-use, portable application for doing a variety of tasks, such as todo listing, text editing, or RSS reading. Plugins are used to implement its various capabilities.

Paste is a PHP application for storing code, text and more. DEMO: https://paste.boxlabs.uk/ Initially forked from the freely available source pastebin.com used before the domain was sold in 2010, lots of improvements have been included over the years such as user accounts and a featureful administration backend. See https://github.com/boxlabss/PASTE/blob/master/docs/CHANGELOG.md

Docear (pronounced dog-ear) is what we call an “academic literature suite”. It integrates everything you need to search, organize and create academic literature in a single application: a digital library, reference manager, PDF and file manager, note taking and mind mapping. And the best: Docear works seemlessly with many existing tools like Mendeley, Microsoft Word, and Foxit Reader. Docear is free and open source, based on Freeplane, funded by the German Federal Ministry of Technology...