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Neuroph is lightweight Java Neural Network Framework which can be used to develop common neural network architectures. Small number of basic classes which correspond to basic NN concepts, and GUI editor makes it easy to learn and use.
jFAN2 project develops a JavaAPI to use a neural network (neuro-fuzzy) called FAN (Free Associative Neurons). Its an reprogramed version of jFAN "https://sourceforge.net/projects/jfan/".
3-layer neural network for regression and classification with sigmoid activation function and command line interface similar to LibSVM.
Quick Start: "java -jar nen.jar"