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SW2PSA (Stop & Wait and Sliding Window Protocol Simulator and Animator
...The aim of SW2PSA is to be used as a tool to support the animation of this protocols in a course like data networks, communication protocols or other related, and to include in the course a project that involves the programming of any of these protocols using a very known language as Java.
Since it is an open source program also helps the student who wishes to know the structure of a simple discrete event network simulator.
For new versions, check https://github.com/Darkkey/javaNetSim
javaNetSim (Java Network Simulator) - it's a fork of a project jFirewallSim. The main goal of javaNetSim is creating a software to simulate various TCP/IP networks based on Ethernet, WiFi, PPP, etc...
iSNS is an interactive neural network simulator written in Java/Java3D. The program is intended to be used in lessons of Neural Networks. The program was developed by students as the software project at Charles University in Prague.
The goal of this project is to be an improvement of the original Network Animator (NAM) module provided as part of the Network Simulator 2 (NS2). This tool provides topology visualization, TCL script generation, and enhanced simulation animation.