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The Common Open Research Emulator (CORE) is a tool for emulating networks on one or more machines. You can connect these emulated networks to live networks. CORE consists of a GUI for drawing topologies of lightweight virtual machines, and Python modules for scripting network emulation.
Simured is a multicomputer network simulation whith visual interface to see packet movement on the network. It is multi platform and there are versions in Java and C++.
GNNS - GNNS Neural Network Simulator, is both a set of libraries and an interface for creating and learning neural networks. It is aimed to support as many network typs and learning algorithms as possible. GNNS is meant to support different platforms.