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Safe Harbor Deidentification for medical documents
Phalanx - Deidentify
Safe Harbor Deidentification Mode of Phalanx is an abridged pipeline of NLP annotators culminating in NER annotators which write output of text offsets. It uses the Safe Harbor deidentification method.
We describe a simple XML format to share text documents and annotation
...
- BioC-formatted corpora
- BioC tools that work with BioC corpora
BioC goals
- simplicity
- interoperability
- broad use
- reuse
There should be little investment required to learn to use a format or a software module to process that format. We are interested in reuse, and we focus on common NLP tasks that are broadly useful for textmining.
MutationFinder is a biomedical natural language processing (NLP) system for extracting mentions of point mutations from free text. MutationFinder achieves high performance (99% precision, 81% recall on blind test data) as an information extraction system