EDA is Graphical User Interface and Matlab compiled application for filtration of LC-MS or GC-MS, based on probalistic methods. Including peaks and compounds segmentation with various visualizations. This software can be used for metabolomics, proteomics
The Experimental Factor Ontology describing experimental variables
*** Please note this repository is now deprecated as of January 2018. All EFO development and source code has been moved to https://github.com/EBISPOT/efo *** The Experimental Factor Ontology (EFO) available from http://www.ebi.ac.uk/efo is an application focused ontology modeling the experimental factors in ArrayExpress and constructing mappings to multiple existing domain specific ontologies. To submit new terms, features or report bugs please submit a ticket at the following: http://www.ebi.ac.uk/panda/jira/secure/CreateIssue!default.jspa
Direct tissue-level image quantification package for Mathematica
ImagingAnalysis is a Mathematica package that performs grid-based analysis of time-lapse imaging data saved in a sequence of TIFF files. This package requires Mathematica 7.0. Revised on 14 May 2017: Bugs are fixed and incompatibility issues are resolved. The current version runs on Mathematica 11.
Circadian behaviral assay software for Arduino 1.0
The Arduino routines (.ino) control light-on timing under various entrainment schemes and measures general movements using PIR and the light level using CdS in three animal chambers. Requires Arduino 1.0 and Arduino hardwares (Uno or Mega). 1. _3ChambersEPLPDD.ino: 12-12 LD to long photoperiod 2. _3ChambersTCycle.ino: 12-12 LD to T=23/T=25 cycles (Note: A critical error has been found in _3ChambersTCycle.ino. It will not be available until the error is fixed. 14-SEP-2012)
Biomedical Information Management System (BIMS) is a modular multilayer object - oriented software architecture, which provides a flexible computational solution to capture and manage a heterogeneous biomedical data: textual and visual information.
CHIRIS (Canada Health Infoway Reference Implementation Suite) is a demonstration of Electronic Health Record (EHR) interoperability messaging created by Canada Health Infoway. The project demonstrates and proves Patient Registry interoperability messagin
Is an application for management of dengue case data, including basic patient information, clinical information, and laboratory test results, designed for implementation and use in frontline health clinics it includes a geographic management system.
This is the traditional, brief-style LISP subset interpreter will be seen as the embedder application template. The short, minimal C (not C++) source code and description are available at http://e-vi.org/DOCS/FREESTYLISP.ZIP
CAI page set up for on-line course.
HATS (Haplotype Amplification in Tumor Sequences) is a tool that calls the amplified alleles, and thus amplified haplotype, in copy number aberration regions in next generation sequencing tumor data. The amplified haplotype may reveal gene variants.
ONTODerm is a specialty specific ontology for dermatology to integrate dermatology with medical software systems.
Universitary Web based project to manage Medical Records.
Primarily being designed to replace an Access-generated front-end for an Access database at a nursing home, it will be used to file medical charts, etc.
Discrete event model simulating bacteria and bacteriophage
Moved to: http://parkermills.github.io/phagetherapy/
Semantic Internet and IPSourcing: Internet becomes the knowledge.
With the proliferation of networked devices, deployment, maintenance and scalability of the networks and also content distribution on Internet become a significant issue. End users recognize that Internet becomes more and more a content distribution system rather than a communication platform. In this project, we aim at developing Semantic Internet which addresses content-centric networking and M2M communication. We change the way Internet operates. Internet becomes the knowledge. The metadata of the content of the IPv6 packets and the capabilities of the device is inserted into the IPv6 options header. Routers (machines) process packets and establish a semantic database. We call this concept as IP sourcing. Any unencrypted IP packet enables populating the semantic database and Internet becomes a very large independent, distributed information center. Any web search, tweet or communication may help Internet build an information database.
TeleMAP is telemedicine tool developed thinking in supporting Land-mines victims, with the intention of extending it to other medical domains.
VTK.NET Example is a collection of example for the Visualization Toolkit (VTK - http://www.kitware.com). It demonstrate, the basic visualisation algorithm in .NET 2.0 platform and C# programming language.
Protein Structure and Interaction Analyzer