BWA is a program for aligning sequencing reads against a large reference genome (e.g. human genome). It has two major components, one for read shorter than 150bp and the other for longer reads.
Easy to use, easy to install, actively maintained and actively supported, phpseclib is the best way to utilize SSH, SFTP and RSA in PHP.
All information from hardware sensors on your Mac
HWSensors is a software bundle that includes drivers and applications that allow you to access information from hardware sensors available on your Mac. FakeSMC is an open source SMC device driver/emulator developed by netkas (http://netkas.org/). NOTE: FakeSMC & Plugins starting from v915 provide additional sensors information to HWMonitor then running on Macs. By installing FakeSMC on real Mac you should consider you know what you are doing and how to recover your system if something will goes wrong. All repositories: Sourceforge, sources & downloads: https://sourceforge.net/projects/hwsensors/ BitBucket, sources & downloads: https://bitbucket.org/kozlek/hwsensors/overview Assembla, sources: https://www.assembla.com/code/fakesmc/git/nodes GitHub, sources: https://github.com/kozlek/HWSensors HWSensors Project (c) 2014 netkas, slice, usr-sse2, kozlek, navi, THe KiNG, RehabMan and others. All rights reserved.
A multi-platform software synthesiser emulating (somewhat inaccurately) pre-GM MIDI devices such as the Roland MT-32, CM-32L, CM-64 and LAPC-I. In no way endorsed by or affiliated with Roland Corp. Source hosted at: http://www.github.com/munt/
Tadween is a powerful multilingual application allowing users to write Arabic in applications that support Unicode but doesn't fully support Arabic. This project is sponsored by Raouf Shabayek and ArabTeam2000.
Solve linear programming problems
Linear Program Solver (LiPS) is an optimization package oriented on solving linear, integer and goal programming problems. The main features of LiPS are: ● LiPS is based on the efficient implementation of the modified simplex method that solves large scale problems. ● LiPS provides not just an answer, but a detailed solution process as a sequence of simplex tables, so you can use it for studying/teaching linear programming. ● LiPS gives sensitivity analysis procedures, which allow us to study the behaviour of the model when you change its parameters, including: analysis of changes in the right sides of constraints, analysis of changes in the coefficients of the objective function, analysis of changes in the column/row of the technology matrix. Such information may be extremely useful for the practical application of LP Models. ● LiPS provides methods of goal programming, including lexicographic and weighted GP methods, which are oriented on multi-objective optimisation.
See http://okapi.opentag.com/ for LATES VERSION of the Okapi Framework
THIS VERSION ON SOURCEFORGE IS NO LONGER SUPPORTED and works only on Windows. The Okapi Framework is a set of components and tools for localization and translation tasks. THE NEWEST JAVA-BASED VERSION OF OKAPI IS AVAILABLE AT: http://okapi.opentag.com/ The new version runs on Windows, Mac, Linux, etc.
A software-based online payment system
Bitcoin is a decentralized P2P electronic cash system without a central server or trusted parties. Users hold the crypto keys to their own money and transact directly with each other, with the help of the network to check for double-spending.
A C++ library of designs, containing flexible implementations of common design patterns and idioms.
The stuff here has no documentation and some of it may never be completed. This is my playground, use at your own risk.
Hybrid energy-efficient digital currency
Novacoin is a decentralized electronic cash system based on an open-source, peer-to-peer internet protocol. It works without a central server or trusted parties. Users hold the ECDSA private keys to their own money and transact directly with each other, with the help of the network to check for double-spending. They are also able to participate in the network protection using own money or computing power. A hybrid Proof-of-Work & Proof-of-Stake scheme is used to provide a protection against double-spend. The main project repository: https://github.com/novacoin-project/novacoin
Syllable Desktop is a complete operating system that is easy to use, powerful, lightweight and extraordinarily fast and responsive. It has its own kernel, filesystem, GUI and applications. Syllable Server is a matching small and efficient Linux server.
An XML parser C library that's simple and easy to use. Inspired by simpleXML for PHP.
"VM Tweaker" is a hidden features tweaker for VMWare "*.vmx" files. Originally started as a simple VM guest time tweaker it gradually evolved into quite a useful tool. Short overview of features: Different VM EFI/BIOS Tweaks, Memory performance optimizations; VM state backup (VMWare Player Snapshot-like behaviour); Time/date sync between host and guest; VM Debugging config; MAC address tweaking; UUID keep switch(VM 5.x-like); Hardware compatibility switch(esx/hosted); Tweak amount of VGA RAM and more...
Volocian believes first and foremost that financial status shouldn’t be a barrier to entry in multimedia content creation. Whether you want to design a product or website, record a band, remix a song, or produce a feature length movie with professional post production graphics and effects, Volocian™ wants to help, even if you’re using borrowed hardware with no previous experience. We provide affordable products and services for any budget, including cost-free solutions for education and demo purposes, while everything we do is designed with ease of use and flexibility in mind, to suit everyone from novice hobbyists to expert professionals. Wherever possible, Volocian™ relies on free, open source, and cross-platform software to prevent vendor lock-in, planned obsolescence, and software as a service licensing. While we remain pragmatic about the use of proprietary software, as we’re aware of the feature limitations of some open source solutions, free solutions are preferred.
A Windows application for connecting to and working with several different database systems, ranging from Microsoft Access to MySQL, PostgreSQL, Oracle, SQL Server, SQLite and more, using ODBC drivers. Written in PowerBASIC for Windows 9.
Notice: RMG-Java is no longer in active development. Please find the latest version written in Python at http://reactionmechanismgenerator.github.io To see the website o the old Java version of RMG, visit http://rmg.sourceforge.net RMG (Java version) is an automatic chemical reaction mechanism generator that constructs kinetic models composed of elementary chemical reaction steps using a general understanding of how molecules react (currently limited to C, H, O, and S atoms).
Blackbox is that fast, light window manager you have been looking for without all those annoying library dependancies. If you have a C++ compiler and the X Window System you can compile and use it.
The goal of the project is now to develop a user library called libpfm4 to help setup performance events for use with the perf_events Linux kernel interface. The development of the perfmon kernel subsystem, libpfm and pfmon has now stopped.
The purpose of the SynCE project is to provide a means of communication with a Windows CE or Pocket PC device from a computer running Linux, *BSD or other unices.
"Le Putty" is a ssh suite for Windows based on the very popular Putty project, but with added functionality that can not be included in the regular Putty. "Le Putty" should be as much as possible compatible with the original Putty.
WideStudio is an Integrated Development Environment (IDE) for building window applications in C++, Ruby, Python an Perl for Windows, MacOSX, Linux, FreeBSD, SOLARIS and other unix and BTRON and T-Engine. This is open and free (under MIT/X Consortiun Lice
docbook2X converts DocBook documents to man and Texinfo format.
OpenGL Mathematics (GLM) is a C++ mathematics library for 3D software based on the OpenGL Shading Language (GLSL) specification.