NSB entropy and mutual information estimator; applications to the analysis of neural code.
FAMOUSO is an event-based publish/subscribe middleware written in C++ for systems ranging from 8Bit micro-controllers up to 32Bit PC/Workstations.
ChesROMS is developing a ROMS model of the Chesapeake Bay to help in the prediction of Harmful Algal Blooms. We hope to catalyze a new method of community modeling with involvement beyond the core researchers of the ChesROMS project.
A MATLAB package to simulate sample paths of the solution of a Itô or Stratonovich stochastic differential equation (SDE), compute statistics and estimate the parameters from data. A note of caution: SDE Toolbox is no more developed but it's still downloadable. Its inferential capabilities can be considered surpassed (at best). Actually the parameter estimation methods were already far from the state-of-art when the project began in 2007 (!). The considered implemented parametric and non-parametric Monte Carlo likelihood methods were chosen for their ability to treat both one-dimensional and multivariate SDE systems, although the quality of the inferential results can't match those obtained using more advanced techniques. Nevertheless the toolbox capabilities to simulate numerical solutions of SDE systems are still valid and can serve as a useful starting point to those willing to simulate stochastic dynamical models easily.
Octave Eclipse GUI
Octave development environment built upon Eclipse's Dynamic Languages Toolkit (http://www.eclipse.org/dltk/). Distributed as an Update site for Eclipse 3.7 Indigo and Indigo-based package for several platforms. Supports search, autocompletion, launching scripts, interactive console, debug and integrated plotting on Octave versions 3.2.x, 3.4.x and 3.6.x. The current goal is to make it running out-of-box on multiple platforms. Currently only Linux and Windows are supported. Mac support is possible. The project needs a maintainer for Mac version, since I don't have Mac to build Octclipse and test it on this platform. Also, it is worth to support Eclipse 4.0 Juno with DLTK 4.
The Databionics ESOM Tools offer many data mining tasks using Emergent Self-Organizing Maps. Visualization, clustering, and classification of high-dimensional data using databionics principles can be performed interactively or automatically.
GLPKMEX - a Matlab MEX interface for the GLPK library Note: GLPKMEX is not currently compatible with glpk-4.49, or later. please use with glpk 4.40 - 4.48.
A Latex package, that allows to include Matlab code into a Latex document to generate plots and calculate data. Matlab has to be installed.
Web Interface to Octave allows to run GNU Octave commands from a web browser. Application is written in PHP and needs SQL database. It supports user profiles, user-created functions, scripts.
A Fast Light Neuron Tracing and Editor Tool
The flNeuronTool allows users to reconstruct and proofread neuronal morphologies in light microscopy images. The system incorporates automatic tracing and manual editing of neuron reconstruction into a cooperative 3D interactive visualization-assisted environment, which is a powerful tool for analysis of complex neuronal images.
BRAHMS is a Modular Execution Framework for dynamical systems. It knits together independently-authored software modules implementing dynamical processes into an integrated system, and supervises the deployment and execution of that system.
The KUKA Control Toolbox (KCT) is a collection of MATLAB functions developed at the University of Siena, for motion control of KUKA robot manipulators.
DOGMA is a MATLAB toolbox for discriminative online learning. It implements all the state of the art algorithms in a unique and simple framework. Examples are Perceptron, Passive-Aggresive, ALMA, NORMA, SILK, Projectron, RBP, Banditron, etc.
Complex Systems is a toolbox for SCILAB software. This toolbox measures some parameters for graphs representing complex systems: degree distribution, average neighboring degree, average clustering, and shell index (from k-core decomposition).
Quick reference for switching between mathematical computation environments for computer algebra, numeric processing and data visualisation. Examples are Matlab, IDL, SPlus, and their open-source counterparts Octave, Scilab, Python+NumPy and R.
TKK Voice Source Analysis and Parametrisation Toolkit (Aparat) is a flexible software package and a graphical user interface for glottal inverse filtering and parametrisation of the voice source.
A handle graphics package for Octave, the Free alternative to matlab. OctPlot provides quality postscript(TM) and screen graphics.
Bayesian Surprise Matlab toolkit is a basic toolkit for computing Bayesian surprise values given a large set of input samples. It is also useful as way of exploring surprise theory. For more information see also: http://ilab.usc.edu/
The SELENA and RISe software tools are two packages to assist in computing earthquake damage scenarios. The damage probability for any specific structure follows the computation principles of HAZUS.
A matlab/octave based reaction transport model describing microbially mediated isotope fractionation processes in porous media.
This project contains code for evaluation of reflection symmetry detection algorithms
Randomized Algorithms Control Toolbox is a Matlab toolbox, provides analysis and synthesis methods for control problems with uncertainties.
PeterHi is an initiative to provide a set of tools for education based on your existing IT infrastructure.
Simulating morphogenesis in developmental biology