An open source framework for LC-MS based proteomics and metabolomics. OpenMS offers data structures and algorithms for the processing of mass spectrometry data. The library is written in C++.
Linux Studio Plugins Project
LSP (Linux Studio Plugins) is a collection of open-source plugins currently compatible with LADSPA, LV2 and LinuxVST formats. Also standalone plugins for JACK are provided since version 1.0.8. The basic idea is to fill the lack of good and useful plugins under the GNU/Linux platform. After some contributions to other open source projects the decision was made to implement separate and independent plugin distribution.
OpenHantek is a free software for Hantek (Voltcraft/Darkwire/Protek/Acetech) USB DSOs based on HantekDSO. The UI is written in C++/Qt 4 and uses OpenGL to draw the graphs. It was tested with the DSO-2090, test results with other models are welcome.
Inspired by JUnit, csUnit brings the power of unit testing to the .NET framework. csUnit is your key to unit testing and test-driven development using .NET languages such as C#, Visual Basic .NET, Visual J#, or Managed C++.
ASCEND is a modelling environment and solver for large or small systems of non-linear equations, for use in engineering, thermodynamics, chemistry, physics, mathematics and biology. Solvers for both steady and dynamic (NLA & DAE) problems, are provid
Hybrid energy-efficient digital currency
Novacoin is a decentralized electronic cash system based on an open-source, peer-to-peer internet protocol. It works without a central server or trusted parties. Users hold the ECDSA private keys to their own money and transact directly with each other, with the help of the network to check for double-spending. They are also able to participate in the network protection using own money or computing power. A hybrid Proof-of-Work & Proof-of-Stake scheme is used to provide a protection against double-spend. The main project repository: https://github.com/novacoin-project/novacoin
PyQwt = FAST and EASY data plotting for Numerical Python and PyQt. PyQwt is a Python wrapper for the Qwt C++ class library which extends the Qt framework with widgets to display and control data for scientific and engineering applications. Please note: We moved RCS, future releases, BUGS to https://github.com/PyQwt
MultiGet is a http/ftp downloader with a nice GUI for linux/windows/unix desktop users. It can run on almost all desktops without any configuration. It has many powerful functions comparing to others.
A library of tools for doing computation in game theory.
Chemical structure sketching tool, for use with various cheminformatics applications. Convenient to use and moderately sophisticated. Suitable for viewing, creating and editing MDL MOL files.
XDrawChem is an application for chemistry drawing and analysis.
XDrawChem is an application for drawing and analyzing chemical structures and reactions. Please visit the website for full details. Download source and binary releases here, and clone the source from GitHub at the external link above.
Toxicity prediction for chemical compounds
A GUI application which estimates toxic hazard of chemical compounds. The latest version includes the following toxicity prediction modules: -Cramer rules (oral toxicity) -Toxicity mode of action via Verhaar scheme -Skin irritation and Eye irritation prediction -Benigni / Bossa rulebase for mutagenicity and carcinogenicity prediction -START biodegradation and persistence prediction -Skin sensitisation reactivity domain -Kroes TTC Decision tree -SMARTCyp - Cytochrome P450-Mediated Drug Metabolism and metabolites prediction -Structure Alerts for the in vivo micronucleus assay in rodents (ISSMIC) -Structural Alerts for Functional Group Identification (ISSFUNC) -Structural alerts associated with covalent protein binding and DNA binding. - Ames mutagenicity Toxtree provides a plugin framework to incorporate different approaches to the estimation. Platform independent (written in Java), with the use of The Chemistry Development Kit.
The scalable open source tool for lean and agile project management
Agilefant is a simple but powerful web based tool for lean and agile project management. It is the most versatile open source solution of its kind today, with a rapidly growing user base of more than 10k users around the world in thousands of organizations. Based on more than ten years of solid scientific research within real world organizations, Agilefant's unique model scales from personal todo-lists to large-scale multi-team development and long-term product and portfolio management. Unlike other tools, Agilefant adapts to your existing team structure and assignments, and helps achieve true enterprise agility with the fraction of the cost and time needed to adopt cumbersome project management suites offered by competitors.
Graph is a program used for drawing graphs of mathematical functions. It is easy to use while having a lot of features and settings. Official web site is located at http://www.padowan.dk
CodonW is a programme designed to simplify the Multivariate analysis (correspondence analysis) of codon and amino acid usage. It was written in ANSI compliant C. See the README file for more information.
A free video motion analysis package
PhysMo is a tool for frame-by-frame video analysis of motion. PhysMo can be calibrated to real-world distances, and exports object "X-Y displacement (m) against time (s)" data to Microsoft Excel. This enables calculation of velocity and acceleration
EasyBMP is an easy cross-platform C++ library for reading and writing Windows bitmap BMP files. No installation, no need for external libraries, small size, well-documented, and simple enough for the novice programmer to start in just minutes!
Tool kit for building highly secure special-purpose operating systems
The Genode OS Framework is a tool kit for building highly secure special-purpose operating systems. It scales from embedded systems with as little as 4 MB of memory to highly dynamic general-purpose workloads. Genode is based on a recursive system structure. Each program runs in a dedicated sandbox and gets granted only those access rights and resources that are needed for its specific purpose. Programs can create and manage sub-sandboxes out of their own resources, thereby forming hierarchies where policies can be applied at each level. The framework provides mechanisms to let programs communicate with each other and trade their resources, but only in strictly-defined manners. Thanks to this rigid regime, the attack surface of security-critical functions can be reduced by orders of magnitude compared to contemporary operating systems.
phpLDAPadmin is a web-based LDAP administration tool for managing your LDAP server. With it you can browse your LDAP tree, view LDAP schema, perform searches, create, delete, copy and edit LDAP entries. You can even copy entries between servers.
TASSEL is a bioinformatics software package
TASSEL is a bioinformatics software package that can analyze diversity for sequences, SNPs, or SSRs. Genotype/phenotype associations can be carried out by GLM or a mixed model. Estimates distance and linkage disequilibrium statistics.
SimMetrics is a Similarity Metric Library, e.g. from edit distance's (Levenshtein, Gotoh, Jaro etc) to other metrics, (e.g Soundex, Chapman). Work provided by UK Sheffield University funded by (AKT) an IRC sponsored by EPSRC, grant number GR/N15764/01.
develop, simulate and run magnetic resonance sequences
ODIN is a free software framework for rapid prototyping of magnetic resonance imaging (MRI) sequences. The sequences can be tested, simulated and executed on scanner hardware from different manufacturers.
FCSalyzer is a free program for analysing flow cytometry data
FCSalyzer is a free program for analysing flow cytometry data. It is programmed in Java and should therefore work on many different operating systems. FCSalyzer offers an easy What-you-see-is-what-you get interface and provides the standard analysing tools - dot plots, histograms, complex gating strategies and associated statistics. Impressum / Legal Notice Sven Mostböck Murlingengasse 25/5 1120 Wien Austria e-mail: email@example.com second contact option: use the open discussion on the FCSalyzer sourceforge page: http://sourceforge.net/p/fcsalyzer/discussion/
Full featured free PACS based on dcm4chee and mysql, with remote web accession available for Linux in Debian packaging format for x86 32 and 64 bit processors. (KEYWORDS: PACS,DICOM,HL7,WORK LIST)