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"I see in 3D" (iCn3D) Structure Viewer is not only a web-based 3D viewer, but also a structure analysis tool interactively or in the batch mode using NodeJS scripts based on the npm package icn3d. iCn3D synchronizes the display of 3D structure, 2D interaction, and 1D sequences and annotations. Users' custom displays can be saved in a short URL or a PNG image. The complete package of iCn3D including Three.js and jQuery is in the directory "dist" after you get the source code with the "Code" button. View a 3D structure in iCn3D, input a PDB ID, and click "Load". ...

File-specific icons in Atom for improved visual grepping. Everything is handled using CSS classes. Use your stylesheet to change or tweak icons. Consult the package stylesheets to see what classes are used. Choose your own shades. Assign icons by file extension. Assign icons to directories. A restart is needed to complete the installation. Reload the window, or restart Atom. As of v2.0, classes are used for displaying icons instead of mixins. If you're a package author, you can integrate File-Icons using Atom's services API.