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The Chemistry DevelopmentKit (CDK) is a scientific, LGPL-ed library for bio- and cheminformatics and computational chemistry written in Java.
The main home page of the CDK is now at: http://cdk.github.io
Vitral SDK (Vitral Software DevelopmentKit) is a java based software architecture for the development of computer graphics applications. Supports solid modeling, offline and JOGL rendering, animation/simulation and human-machine interaction.
JJack is a JACK audio driver for the Java Sound API and a framework for the Java programming language that allows Java applications to use the JACK Audio Connection Kit.