Showing 82 open source projects for "java projects on linux"

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  • 1
    primeHandle is a set of data management tools in support of the PrIMe Initiative (http://primekinetics.org). primeHandle includes graphical user interfaces for searching through data collections, editing and submitting data to the PrIMe Data Depository.
    Downloads: 0 This Week
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  • 2
    NMRShiftDB
    NMRShiftDB is an open-source, open-access, open-submission, open-content web database for chemical structures and their nuclear magnetic resonance data.
    Downloads: 3 This Week
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  • 3
    A sorting tool for Bioinformatics, Biochemistry and/or Molecular biology. This sorts nucleotide sequences aligned using "ClustalW". There may be a way to do this w/ original app, but someone I know couldn't figure out how - thus this project was born
    Downloads: 0 This Week
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  • 4
    This Project moved to https://sourceforge.net/projects/synbiowave/ because the name GeneWave is a registered trademark... Please do not use this project anymore.
    Downloads: 0 This Week
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  • 5
    A collection of applets used to demonstrate physics and math principles. The applets include: a ray diagram drawing applet, a collision of disks applet, an electromagnetic field mapper and a 3d hydrogen orbital simulation.
    Downloads: 0 This Week
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  • 6
    Grid-Enabled Molecular Simulation Repository (GEMS)
    Downloads: 0 This Week
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  • 7
    Meredys (MEsoscopic REaction DYnamics Simulator) is a particle based stochastic simulation software designed to model and simulate reaction-diffusion systems. (http://www.ebi.ac.uk/compneur-srv/meredys.html)
    Downloads: 0 This Week
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  • 8
    The Hanalyzer is a tool designed to help biologists explain results observed in genome-scale experiments and to generate new hypotheses. It combines information extraction, semantic data integration, reasoning, and visualization.
    Downloads: 0 This Week
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  • 9
    DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and DIYGV
    Downloads: 0 This Week
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  • 10
    ProteinShader is a molecular visualization tool that can produce illustrative renderings of proteins that approximate what an artist might create using pen and ink. This free platform-independent program is written in Java and OpenGL Shading Language.
    Downloads: 1 This Week
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  • 11
    A Java-based tool to visualize, integrate and analyze LC-MS/MS proteomics data.
    Downloads: 0 This Week
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  • 12
    Agent-based multiscale model of cancer proliferation dynamics
    Downloads: 0 This Week
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  • 13
    Extraction of binding sites of ligands and search for unknown binding sites on apoproteins. Some call it docking. Some call it binding site detections. Some call it knowledge based.
    Downloads: 0 This Week
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  • 14
    Ninja is an object oriented toolkit for manipulating InChI identifiers.
    Downloads: 0 This Week
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  • 15
    Janocchio is an application or applet for viewing 3D molecular structures and calculating NMR couplings and NOEs
    Downloads: 0 This Week
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  • 16
    Rosetta is a molecular language framework written in Java and based on Octet.
    Downloads: 0 This Week
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  • 17
    Wattos is a collection of mostly Java programs for Structural Biology and NMR Spectroscopy. It's programs analyze, annotate, parse, archive, and disseminate experimental NMR data deposited by authors world wide into the PDB and BMRB.
    Downloads: 0 This Week
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  • 18
    This project is A Mitochondrial OxydoReduction Simulation System. It consists of two linked projects: a program for displaying and analysing large biomolecular systems (Floral) and a multi-agent simulator for biomolecular oxydoreduction systems (AMORSS).
    Downloads: 0 This Week
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  • 19
    JPhysChem - a mathematical modeling toolbox designed to provide an abstract layer and a comprehensive graphical front-end for general model building and specific modeling and data processing in the field of mass spectrometry and physical chemistry.
    Downloads: 0 This Week
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  • 20
    MCDL is a small Java molecular viewer/editor for chemical structures, stored in Modular Chemical Descriptor Language linear notation. Features include accurate structure diagram generation, and Kekule chemical structure creation from aromatic bond list.
    Downloads: 0 This Week
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  • 21
    Esra is a 100% pure java library for the interactive analysis of molecular mechanics data. Mangles your data in your favorite scripting language.
    Downloads: 2 This Week
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  • 22
    Octet is an object-oriented molecular representation framework written in Java.
    Downloads: 3 This Week
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  • 23
    Comprehensive Meta Prediction and Annotation Services for Proteins: The new all-in-one prediction tool that can be easily extended to include any SOAP/WSDL-enabled prediction servers. A concise user interface lets you use the results instantly.
    Downloads: 0 This Week
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  • 24
    2-D chemical structure drawing program
    Downloads: 0 This Week
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  • 25
    Synapsodel is an agent-based model of synaptic neurotransmission.
    Downloads: 0 This Week
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