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SeaBreeze is a device driver library that provides an interface to select Ocean Optics spectrometers. It is written in C/C++ and builds and runs on Windows (XP/7/8), MacOSX, and Linux (x86/x64/ARM).
Counts NGS read alignments against GTF annotations in a multithreaded and scalable fashion.
Benchmark: 8 core 1M annotations for 2Gb sorted reads ~30 seconds compared to ~28 minutes for bedtools multicov.
Files include:
fast_count_multi - reports all counts and RPKM, multithreading support
fast_count_deseq - reports gene counts in deseq compatible format, multithreading support
fast_count - reports all counts with no multithreading support.
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