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Modeling and analysis tools for the TX-TL cell-free expression system
This project contains tools for using the TX-TL cell-free expression system. These tools include component models for simulating and analyzing biomolecular circuits, as well tools for composing circuits and creating more complex systems.
NOTE: This project has been shifted to GitHub: https://github.com/BuildACell/txtlsim
The BioNLP UIMA Component Repository provides UIMA wrappers for novel and well-known 3rd-party NLP tools used in biomedical text prosessing, such as tokenizers, parsers, named entity taggers, and tools for evaluation.
PocketAnalyzerPCA combines a geometric algorithm for detecting pockets in proteins with Principal ComponentAnalysis and clustering. This enables visualization and analysis of pocket conformational distributions of large sets of protein structures.