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An intuitive molecular editor and visualization tool
Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science and related areas. It offers a flexible rendering framework and a powerful plugin architecture.
...SPiM2Eclipse provides a bridge for those running SPiM from the command-line by allowing simulations to be completed by a single click, displaying an embedded plot of the results.
Features:
-As an Eclipseplugin you have all of the powerful features of Eclipse available to you.
-Syntax color highlighting
-One-click simulation with plotting
For more information on SPiM see the offical project website at: http://research.microsoft.com/en-us/projects/spim/