Showing 101 open source projects for "java-gnome"

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  • 1
    Agent-based multiscale model of cancer proliferation dynamics
    Downloads: 0 This Week
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  • 2
    A Folding@Home integrated monitoring environment, designed for Linux, *nix systems and Windows, which is intended to be easy-to-use and provide a flexible, customiseable and "user-friendly" environment for reviewing the status of active F@H clients.
    Downloads: 0 This Week
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  • 3
    Extraction of binding sites of ligands and search for unknown binding sites on apoproteins. Some call it docking. Some call it binding site detections. Some call it knowledge based.
    Downloads: 0 This Week
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  • 4
    PepArML: An unsupervised, model-free, combining peptide identification arbiter for tandem mass spectra via machine learning.
    Downloads: 0 This Week
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  • 5
    Ninja is an object oriented toolkit for manipulating InChI identifiers.
    Downloads: 2 This Week
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  • 6
    Rosetta is a molecular language framework written in Java and based on Octet.
    Downloads: 0 This Week
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  • 7
    Janocchio is an application or applet for viewing 3D molecular structures and calculating NMR couplings and NOEs
    Downloads: 0 This Week
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  • 8
    Wattos is a collection of mostly Java programs for Structural Biology and NMR Spectroscopy. It's programs analyze, annotate, parse, archive, and disseminate experimental NMR data deposited by authors world wide into the PDB and BMRB.
    Downloads: 0 This Week
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  • 9
    JPhysChem - a mathematical modeling toolbox designed to provide an abstract layer and a comprehensive graphical front-end for general model building and specific modeling and data processing in the field of mass spectrometry and physical chemistry.
    Downloads: 0 This Week
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  • 10
    MCDL is a small Java molecular viewer/editor for chemical structures, stored in Modular Chemical Descriptor Language linear notation. Features include accurate structure diagram generation, and Kekule chemical structure creation from aromatic bond list.
    Downloads: 0 This Week
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  • 11
    NOC is a open source development toolkit and a powerful molecular explorer for protein structure visualizing,analysis,crystallographic mapping, modeling, and refinement, Gromacs/Amber MD trajectories displaying,movie making...
    Downloads: 2 This Week
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  • 12
    A system for temperature and spectrum acquisition control in hyperfine interaction research.
    Downloads: 0 This Week
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  • 13
    Esra is a 100% pure java library for the interactive analysis of molecular mechanics data. Mangles your data in your favorite scripting language.
    Downloads: 0 This Week
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  • 14
    FORce based Cluster Editing (FORCE) is a Java software heuristically solving the graph cluster editing problem on weighted edges using BLAST E-values. It further provides a training mode for heuristic parameter estimation.
    Downloads: 0 This Week
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  • 15
    Bioinformatics tools and applications for the analysis of genomic sequence data.
    Downloads: 0 This Week
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  • 16
    Octet is an object-oriented molecular representation framework written in Java.
    Downloads: 0 This Week
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  • 17
    Comprehensive Meta Prediction and Annotation Services for Proteins: The new all-in-one prediction tool that can be easily extended to include any SOAP/WSDL-enabled prediction servers. A concise user interface lets you use the results instantly.
    Downloads: 0 This Week
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  • 18
    2-D chemical structure drawing program
    Downloads: 0 This Week
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  • 19
    Synapsodel is an agent-based model of synaptic neurotransmission.
    Downloads: 0 This Week
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  • 20
    JChemPaint Applet and Swing Application
    The JChemPaint Applet and Swing Application are Java programs for drawing 2D chemical structures like those found in most chemistry textbooks. It is based on the Chemistry Development Kit (cdk.sf.net). Downloads, tracker, and source code repository can be found on https://jchempaint.github.io
    Downloads: 0 This Week
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  • 21
    openSputnik is a robust distributed platform for massive scale precalculation of genetic and genomic data using contemporary bioinformatics methods. Annotated DNA, RNA and protein sequences are stored as binary objects in a variery of relational database
    Downloads: 0 This Week
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  • 22
    Molevolve is a Java library for running a Genetic Algorithm to model the 3-dimensional structures of peptide chains from amino-acid sequences. Client code can specify its own peptide chain model, fitness functions and GA operations. Requires JDK 1.5.
    Downloads: 0 This Week
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  • 23
    The Octet-CDK interoperability package.
    Downloads: 0 This Week
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  • 24
    LineageEvolver is a simulation system for molecular evolution. Sequence evolution is simulated using modular processes such as substitutions, gene duplication/death, horizontal gene transfer, and more.
    Downloads: 0 This Week
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  • 25
    Crude Metabolic Pathway Analysis visualization software. For a software engineering class.
    Downloads: 0 This Week
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