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Jamberoo (former JMolEditor) is a library of algorithms for structural Computational Chemistry implemented in the Java programminglanguage. The Jamberoo classes can be integrated into other Java applications.
Stochastic Pi Machine (SPiM), created by Microsoft, is a programminglanguage for modeling biological processes. Two tools are available from Microsoft for simulation. A web application Visual SPiM, and a destkop application SPiM Player. Both simulation tools require to be run on a Windows platform.
Fortunately Microsoft has also released a command line version for Linux and Mac OS based on OCAML however this version will only output a CSV file for the simulation results.
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Cca-forum unifies the Common Component Architecture tools and tutorial. It includes the CCA specifications, the Ccaffeine framework for HPC, and related tools. These support multilanguage scientific and parallel computing.
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