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Shape is a molecular conformation prediction program. It uses a geneticalgorithm to efficiently search the conformational space of a biomolecule and then clusters the results. It is very simple to use.
Molevolve is a Java library for running a GeneticAlgorithm to model the 3-dimensional structures of peptide chains from amino-acid sequences. Client code can specify its own peptide chain model, fitness functions and GA operations. Requires JDK 1.5.