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Showing 110 open source projects for "java on java"

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  • 1
    CIP-FOSS will serve as a common entry page for Free and Open Source Software developed at the International Potato Center (CIP), Lima, Peru (http://www.cipotato.org).
    Downloads: 0 This Week
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  • 2
    The Hanalyzer is a tool designed to help biologists explain results observed in genome-scale experiments and to generate new hypotheses. It combines information extraction, semantic data integration, reasoning, and visualization.
    Downloads: 0 This Week
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  • 3
    ProteinShader is a molecular visualization tool that can produce illustrative renderings of proteins that approximate what an artist might create using pen and ink. This free platform-independent program is written in Java and OpenGL Shading Language.
    1 Review
    Downloads: 0 This Week
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  • 4
    DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and DIYGV
    Downloads: 3 This Week
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  • 5
    4-Dimensional Cell Simulator (4DiCeS) is a framework on hybrid (stochastic and deterministic) modeling and simulation of (whole) cell environments in 4D. The framework may incorporate any reaction and diffusion algorithms applicable in a 4D grid layout.
    Downloads: 0 This Week
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  • 6
    A Java-based tool to visualize, integrate and analyze LC-MS/MS proteomics data.
    Downloads: 0 This Week
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  • 7
    Agent-based multiscale model of cancer proliferation dynamics
    Downloads: 0 This Week
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  • 8
    Extraction of binding sites of ligands and search for unknown binding sites on apoproteins. Some call it docking. Some call it binding site detections. Some call it knowledge based.
    Downloads: 0 This Week
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  • 9
    PepArML: An unsupervised, model-free, combining peptide identification arbiter for tandem mass spectra via machine learning.
    Downloads: 0 This Week
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  • 10
    Ninja is an object oriented toolkit for manipulating InChI identifiers.
    Downloads: 1 This Week
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  • 11
    Janocchio is an application or applet for viewing 3D molecular structures and calculating NMR couplings and NOEs
    Downloads: 0 This Week
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  • 12
    Rosetta is a molecular language framework written in Java and based on Octet.
    Downloads: 0 This Week
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  • 13
    Wattos is a collection of mostly Java programs for Structural Biology and NMR Spectroscopy. It's programs analyze, annotate, parse, archive, and disseminate experimental NMR data deposited by authors world wide into the PDB and BMRB.
    Downloads: 0 This Week
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  • 14
    JPhysChem - a mathematical modeling toolbox designed to provide an abstract layer and a comprehensive graphical front-end for general model building and specific modeling and data processing in the field of mass spectrometry and physical chemistry.
    Downloads: 0 This Week
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  • 15
    MCDL is a small Java molecular viewer/editor for chemical structures, stored in Modular Chemical Descriptor Language linear notation. Features include accurate structure diagram generation, and Kekule chemical structure creation from aromatic bond list.
    Downloads: 0 This Week
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  • 16
    A system for temperature and spectrum acquisition control in hyperfine interaction research.
    Downloads: 0 This Week
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  • 17
    Esra is a 100% pure java library for the interactive analysis of molecular mechanics data. Mangles your data in your favorite scripting language.
    Downloads: 3 This Week
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  • 18
    FORce based Cluster Editing (FORCE) is a Java software heuristically solving the graph cluster editing problem on weighted edges using BLAST E-values. It further provides a training mode for heuristic parameter estimation.
    Downloads: 0 This Week
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  • 19
    Bioinformatics tools and applications for the analysis of genomic sequence data.
    Downloads: 0 This Week
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  • 20
    Octet is an object-oriented molecular representation framework written in Java.
    Downloads: 0 This Week
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  • 21
    Comprehensive Meta Prediction and Annotation Services for Proteins: The new all-in-one prediction tool that can be easily extended to include any SOAP/WSDL-enabled prediction servers. A concise user interface lets you use the results instantly.
    Downloads: 0 This Week
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  • 22
    IntiMap is a convenience tool to run the MS-DOS command-line tool MapPop for selective genotyping. It adds facilities to prepare genotyping data files, manage genotype sets and visualize mapping results (genetic marker maps).
    Downloads: 0 This Week
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  • 23
    2-D chemical structure drawing program
    Downloads: 0 This Week
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  • 24
    Synapsodel is an agent-based model of synaptic neurotransmission.
    Downloads: 0 This Week
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  • 25
    JChemPaint Applet and Swing Application
    The JChemPaint Applet and Swing Application are Java programs for drawing 2D chemical structures like those found in most chemistry textbooks. It is based on the Chemistry Development Kit (cdk.sf.net). Downloads, tracker, and source code repository can be found on https://jchempaint.github.io
    1 Review
    Downloads: 4 This Week
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