Showing 6 open source projects for "clip-4-win"

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  • 1
    MEMBPLUGIN

    MEMBPLUGIN

    MEMBPLUGIN: studying membrane complexity in VMD

    MEMBPLUGIN is a membrane analysis tool for molecular-dynamics simulations. It is a collection of visual and command-line tools that can be run within the Visual Molecular Dynamics (VMD) environment to analyze biomolecular simulations of lipid bilayers.
    Downloads: 14 This Week
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  • 2

    diauxic growth model ensemble

    An ensemble of models showing diauxic growth behavior

    ... be categorized according to regulatory, stoichiometric, and physiological constraints and differ from each other on only a single aspect. We distinguish four groups of models: (1) flux balance models that only define reaction kinetics for substrate uptake and by-product excretion, (2) kinetic models without and (3) kinetic models with regulation on the metabolic and/or genetic level, and (4) resource allocation models.
    Downloads: 0 This Week
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  • 3
    pyMDMix

    pyMDMix

    Molecular dynamics with aqueous-organic solvent mixtures

    This python package aims to help people set up and analyze molecular dynamics simulations in aqueous-organic solvent mixtures. See D. Alvarez-Garcia et al. Journal of Medicinal Chemistry, 2014.
    Downloads: 0 This Week
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  • 4
    EoS Solver v1.0

    EoS Solver v1.0

    Solves for molar volumes of 4 types of EoS

    Solve four different cubic equations of state to obtain three roots of molar volume at a given temperature and pressure. These four cubic EoS are :- 1 Van der Waals equation of state 2 Redlich–Kwong equation of state 3 Soave modification of Redlich–Kwong 4 Peng–Robinson equation of state
    Downloads: 0 This Week
    Last Update:
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    Hackers Hate This: Free WAF for Dummies eBook

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  • 5

    Renumber Gromacs Top & Gro Files

    Renumber Gromacs .top and .gro files

    Renumber Gromacs .top and .gro files after removing atoms (e.g. hydrogens) for input into grompp
    Downloads: 0 This Week
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  • 6
    TrajLab

    TrajLab

    MATLAB based programs for trajectory simulations of molecules

    TrajLab (which stands for TRAJectory LABoratory) consists of two sets of MATLAB program packages. While subproject MolDynSim deals with generation of molecular trajectories (and other aspects of molecular simulation), subproject MetaStable is dedicated to the analysis of molecular trajectories by detecting metastable conformations (as well as other analysis techniques). Note that each of the two sub-projects has its own SVN repository, wiki, tracker, etc: Probably TrajLab is the first...
    Downloads: 1 This Week
    Last Update:
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