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MolTPC provides a solution for fully automatic tautomer enumeration.
...Compared to the huge efforts made in experimental investigation of tautomerism, open and free algorithmic solutions for prototropic tautomer generation are surprisingly rare. The few freely available software packages limit their output to a subset of the possible configurational space by sometimes unwanted prior assumptions and complete neglection of ring-chain tautomerism. MolTPC provides an adjustable and fully automatic approach for this problem.
The original publication can be found on http://onlinelibrary.wiley.com/doi/10.1002/jcc.23397/full.
...Both simulation tools require to be run on a Windows platform.
Fortunately Microsoft has also released a command line version for Linux and Mac OS based on OCAML however this version will only output a CSV file for the simulation results.
SPiM2Eclipse provides a bridge for those running SPiM from the command-line by allowing simulations to be completed by a single click, displaying an embedded plot of the results.
Features:
-As an Eclipse plugin you have all of the powerful features of Eclipse available to you.
-Syntax color highlighting
-One-click simulation with plotting
For more information on SPiM see the offical project website at: http://research.microsoft.com/en-us/projects/spim/