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PLEKv2

PLEKv2: predicting lncRNAs and mRNAs

...Compile PLEK2.1 $ cd PLEK2.1 3. decompress Coding_Net_kmer6_orf.h5.bz2 model $ bunzip2 Coding_Net_kmer6_orf.h5.bz2 4. decompress Coding_Net_kmer6_orf_Arabidopsis.h5.bz2 model $ bunzip2 Coding_Net_kmer6_orf_Arabidopsis.h5.bz2 USAGE Python PLEK2.py -i fasta_file -m model(ve: vertebrate , pl: plant) Examples: $ python PLEK2.py -i test.fasta -m ve Aimin Li, Haotian Zhou, Siqi Xiong, Junhuai Li, Saurav Mallik, Rong Fei, Yajun Liu, Hongfang Zhou, Xiaofan Wang, Xinhong Hei, Lei Wang. PLEKv2: predicting lncRNAs and mRNAs based on intrinsic sequence features and the coding-net model. ...

Downloads: 5 This Week

Last Update: 2024-08-07
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