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dcm4che is an implementation of DICOM and IHE actors in Java. Homepage: http://www.dcm4che.org, Google Group: http://groups.google.com/group/dcm4che?hl=en, Wiki: http://www.dcm4che.org/confluence, Issue Tracking: http://www.dcm4che.org/jira

CueMol - Molecular Visualization Framework based on OpenGL, Mozilla XULRunner, and javascript

Qu is a MATLAB toolbox for the visualization and analysis of N-dimensional datasets targeted to the field of biomedical imaging. It supports several microscopy image formats and offers a plugin mechanism and a consistent API for easy extension.

The GDL editor is multiplatform application that allows users to create, edit and run GDL files. GDL is a formal language designed to represent clinical knowledge for decision support. It is designed to be natural language- and reference terminology- agnostic by leveraging the designs of openEHR Reference Model and Archetype Model. The tool provides an editing and testing environment capable of generating forms based on the elements defined in the GDL. Requirements: Java Runtime...

The HAPI HL7v2 project has moved to the following home: https://hapifhir.github.io/hapi-hl7v2/

The aim of the cardiac atlas project is to establish a structural and functional atlas of the heart. This project is funded by the NIH grant and led by the University of Auckland, New Zealand.

The OpenCMISS-Zinc Library (opencmiss.org/zinc), or Zinc, is a software library for building interactive graphical modelling and visualisation applications. Models are represented in Zinc as mathematical fields defined over domains, including finite elements with support for high-order basis functions, complex parameter mappings and time variation, and image-based fields. Further fields can be defined by mathematical expressions and algorithms on existing fields, including image...

This project has been moved to CodePlex: http://nhapi.codeplex.com/ .Net version of HAPI (http://hl7api.sourceforge.net/). Object oriented HL7 2.X parser. This was ported from the original HAPI by Bryan Tripp and University Health Network. HL7 parser/encoder written in Microsoft .Net C#. Can encode/decode both XML and Pi

Febrl (Freely Extensible Biomedical Record Linkage) does data standardisation (segmentation and cleaning) and probabilistic record linkage ("fuzzy" matching) of one or more files or data sources which do not share a unique record key or identifier.

Census, formerly NONMEMory, is a project manager for population pharmacokinetic and pharmacodynamic analysis using the nonlinear mixed-effect modelling application NONMEM.

HELEN is a flexible framework to support the computer-based management of Clinical Practice Guidelines (CPG). It covers the whole life-cycle of a guideline, providing methods and tools for each step (from development to clinical use).

Integration engine for Data Collection Application Suite (DCAS). Provides integration code between DCAS and Study Management System (such as SugarCRM)

A toolkit to empower non-programmers to build modules rapidly and easily, primarily for PCDOM PrimaCare and THIRRA EHR.

OpenCell is a user interface for working with CellML models. Features: * Integrate models made up of ODEs. * Supports CellML 1.0 and 1.1, allowing you to build complex models using imports. * Plot and edit graphs. * And more ...

The Open Source Health Information Platform is a Python implementation of openEHR electronic health record specifications http://www.openehr.org. Project website : http://launchpad.net/oship Analytics are at: http://www.ohloh.net/projects/oship

Tools designed to assist in creating and using the RadLex ontology (http://www.radlex.org).

Protege is a free, open-source platform that provides a suite of tools to construct domain models and knowledge-based applications with frame-based and Semantic Web ontologies.

This is a collection of ImageJ macros (scripts) for performing color deconvolution and analysis of immunohistochemistry (IHC) staining on tissue microarray (TMA) images

Frida is image analysis software. Frida was developed by the Johns Hopkins University Tissue Microarray Core Facility. It is open source and written in 100% Java. Frida makes use of functionality from the NIH's ImageJ application. Note: Frida was integr

A Medical Information System (MIS) Application Server based on Web Services and J2EE and administrative tools (Plugins for Eclipse,...)

Microarray Explorer (MAExplorer) is a Java microarray data-mining bioinformatics program. It includes data management, graphics, statistics, clustering, reports, gene data-filtering, user written MAEPlugins, documentation, tutorials, demo data.

OpenClinics is a software platform for the collection, maintainance and analysis of medical, (primarily disease-based), information for use by medical clinics worldwide.

OntoCardio is an initiative to build ontologies for the legacy Cardio Database (Resource of bioinformation on cardiovascular diseases). SMI's Protege and its OWL plug-in has been adopted as the ontology construction and programming framework.

Our goal is to surpass the performance of the Matching Pursuit and Best Basis algorithms and provide progressive time-frequency analysis.