Search Results for "example"

This package includes BBMap, a short read aligner, as well as various other bioinformatic tools. It is written in pure Java, can run on any platform, and has no dependencies other than Java being installed (compiled for Java 6 and higher). All tools are efficient and multithreaded. BBMap: Short read aligner for DNA and RNA-seq data. Capable of handling arbitrarily large genomes with millions of scaffolds. Handles Illumina, PacBio, 454, and other reads; very high sensitivity and...

...ViruSim simulates Patients and Viruses in a pool/container 100 by 100 units each side, by 1000 units in depth. There are 1 to 5000 total number of Patients/Viruses, with a chosen percentage of patients, and the remaining percentage of viruses. For example, you could have 1000 to 5000 total Pat/Viruses, with 25 percentage patients. That would give you 1000 patients, and 3000 viruses. They are then swimming and colliding with each other in the pool (which is 10 million units in volume). Version 5a has been upgraded to version 5b. The graphics have been improved.

...MSTgold accepts single-character data that are nucleotides, amino acids, binary characters, or SNPs; integers that represent, for instance, the lengths of VNTRs or microsatellites; and distance matrices. The MSTgold package includes Mac OS X, Linux, and Windows executables of the MSTgold program, a detailed Manual, example data and results, and executables of the program Fasta2MSTG which converts Fasta sequence files to the MSTgold input format.

This program compares personal gene analysis results from 23andme with extracted databases from the human genome project. An typical example of an extracted database is a dataset which contains all alternative alleles which occur less than 1% of the time.

...Animal Studies puts all the information right at your fingertips. The Animal Studies module provides storage for the genotype information, organise genotyping protocols and archive genetic marker information, including for example PCR conditions and results.

Ablator is a suite of software that automates the microscopic detection of cell targets and also directs a 2-photon microscope to lesion these targets in arbitrary patterns for neuroscience research. See Hayes et al 2012 for an example of its usage (http://www.pnas.org/content/109/21/8286.abstract).

The aim of phpMedCare is the developement of an "electronic health record" with the target of smaller or specialized hospitals (for example geriatric) and nursing homes (retirement homes). Categories: EHR / EPR / HIS / EPA / KIS